Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68100 273 / 1e-86 IAR1 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026186 [exp] 448 / 1e-155 AT1G68100 329 / 5e-109 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G139900 [exp] 315 / 9e-103 AT1G68100 403 / 5e-137 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10042480 pacid=23153918 polypeptide=Lus10042480 locus=Lus10042480.g ID=Lus10042480.BGIv1.0 annot-version=v1.0 ATGGCTGGAGCAATGCTGGGGGATGCTTTTCTTCATCAGTTGCCACATGCATTTGGCTTCTATATAGTTGGTCTCTTTTGCAATGCTTATATGGTGTTAG CTTCAGGTCTATTCTTCTCCCCATATGGTATCCTTCTCTACCTGGTAGAGACATTCCTAAATGATCCGGTAAGAGGCAGCAAGAAGTTTGGGAGACTGAC TAAACTGAGTTGTAGAAAGTCGTTAGTTATAGATGGTGTACCATGGATGTTTTCCAATCATGTCGATGATGTGACAGTGGTTGGGGTTTGTAGCACACAC TGTAGAAACTGGGGGCTTTATTTGTACAAATATTTGTTGGCAACAAGTGCTGTGACTGATGAAAGTGGTAAAGGGACTTTCGTTGTCCAGGTTGAAACAA TTGAATGCACTTCCATTGTGCACTATGGGATGATCGGAGTCACTGTTACAGCATCTTCTATTAATGTCGAACAAATTAGTGGTGGACAACACTCTCATTC TCACGATGACCACGATCATTCGGGGCATGAACATGGGCAGGCACATTCACATTCTTTGGAGGATCTTTCTGTTGGATTGTCCATTTTAGCTGGCATTGTA GTCTTTCTTCTTGTGGAGAAGGCTGTGAGATATGTTGAGGATAACTCTAGTGGCGCTGGTGTTTGGGGCCATACTCATCACCACCACCACAAGAGCAATA AGAAACTGAAGGATGACGATGATGGTCATGAAAAGACAATATTAACTAGTTCTCTTGGTACTGAAGAAGCTTCTGATGGAATTTCAGATGCCATGTCAAA TGGGAACAAGTCAAGTCAACAAGAGACTATTATTCACAGGAGAAAAGGCAAAGGCGAAGAATCAGATGTAGCCGCTGTAGATAGCTCCGGTGCTATCAAA CTATCAGAGGAAAAAGAAGTGGCAAAGTCTCCCTCTAATCTGGTGTTTGGCTATCTTAATTTGTTCTCAGACGGTGTTCATAATTTTACTGATGGAATGG CTCTTGGTAGCGCATTTCTGCTTTATGGATCTGTTGGGGGGTGGTCTAGAACTCTCTTTCTGCTAGCACATGAGCTCCCTCAAGAGGTGGGTGATTTTGG AATCTTGGTGAGGTCTGGTTTCAGTGTGTCCAAAGCTCTTTTCTTCAATTTCCTGTCAGCATTGCTTGCTCTTGTTGGAACTGCACTGGCTCTGATGTGG GGGAAAGATCCAGGACAGTCTTCTTTGATCGAGGGATTTACAGCAGGAGGGTTCATATACATTTCAGCGGCCGGAGTGCTGGCCGAAATGAACAACAACG GCAGCAGCACAACTTTGAAAAGCACAGCAGTTCAAGTAGCGTCCCTTGTATTGGGAATGTCTGTCGCCCTTTGTATTTCGCTTGTAGAATGA
AA sequence Show only first row Show all	>Lus10042480 pacid=23153918 polypeptide=Lus10042480 locus=Lus10042480.g ID=Lus10042480.BGIv1.0 annot-version=v1.0 MAGAMLGDAFLHQLPHAFGFYIVGLFCNAYMVLASGLFFSPYGILLYLVETFLNDPVRGSKKFGRLTKLSCRKSLVIDGVPWMFSNHVDDVTVVGVCSTH CRNWGLYLYKYLLATSAVTDESGKGTFVVQVETIECTSIVHYGMIGVTVTASSINVEQISGGQHSHSHDDHDHSGHEHGQAHSHSLEDLSVGLSILAGIV VFLLVEKAVRYVEDNSSGAGVWGHTHHHHHKSNKKLKDDDDGHEKTILTSSLGTEEASDGISDAMSNGNKSSQQETIIHRRKGKGEESDVAAVDSSGAIK LSEEKEVAKSPSNLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHELPQEVGDFGILVRSGFSVSKALFFNFLSALLALVGTALALMW GKDPGQSSLIEGFTAGGFIYISAAGVLAEMNNNGSSTTLKSTAVQVASLVLGMSVALCISLVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10042480 [exp]	0	1
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10016624 [exp]	2.4	0.8461
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	3.7	0.8503
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	4.2	0.8278
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	5.3	0.8206
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	5.5	0.8407
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	8.0	0.8342
AT3G55600			Membrane fusion protein Use1 (...		Lus10037405 [exp]	8.9	0.8060
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10041182 [exp]	12.4	0.7923
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	14.7	0.8035
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	15.0	0.8196

Compare expression of checked genes

Lus10042480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.