Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78390 270 / 4e-88 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 267 / 2e-87 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 255 / 1e-82 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 235 / 3e-75 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G24220 182 / 4e-55 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G19170 118 / 4e-31 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G63520 97 / 8e-24 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G32810 44 / 3e-05 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026185 [exp] 345 / 2e-118 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10023673 [exp] 179 / 2e-53 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 139 / 1e-38 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10035696 [exp] 118 / 3e-31 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10037286 [exp] 111 / 3e-31 AT4G19170 263 / 9e-86 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 96 / 2e-23 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 93 / 2e-22 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 92 / 8e-22 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 72 / 4e-15 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393800 [exp] 295 / 3e-98 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G112400 [exp] 291 / 1e-96 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 261 / 8e-85 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.003G176300 [exp] 206 / 8e-64 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.005G069100 [exp] 129 / 3e-35 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 127 / 2e-34 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 125 / 5e-34 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 123 / 3e-33 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 122 / 1e-32 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265900 [exp] 107 / 1e-27 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10042481 pacid=23153555 polypeptide=Lus10042481 locus=Lus10042481.g ID=Lus10042481.BGIv1.0 annot-version=v1.0 ATGACTCCACCGGACTCCATTTTCAACGAGAGCGACGAGGAATTGAGAAGCGTACTCTCGGAAATCCGCTTAAACCTAAAAACCGGGAAATCGACTCGGC GTCCGATTATATCGGAAGAGCAAGTGAATCTGGAGGCAGGGATGGTGAATCGCAACCTGCTAGGGAGGAAAACAGAGTTCGCTTACTTAGCTCTTGCGGA GCCATGGCCTAAAGTATCGGGGTTCGCGAAAGTGAACCTCTCAACCGGAGAAGTCGAGAAGCATATCTACGGAGAAGGAAAGTTCGGAGGGGAGCCTCTG TTTCTTCCAAACACATCATCATCTTCCAATAGGGAAGACGACGGGTACATTCTGGCATTCGTTCACGACGAGAAGGAGTGGAAATCGGAGCTCCAGATCA TAAACGCCATGGACATGAAGGTTGAAGCCACAGTAGAGCTCCCTTCCCGGGTCCCTTATGGGTTCCACGGCACGTTCATAAGCGCCAAGGATTTGGAGAA TCAGGCAGAGAAGTGTATGTGA
AA sequence Show only first row Show all	>Lus10042481 pacid=23153555 polypeptide=Lus10042481 locus=Lus10042481.g ID=Lus10042481.BGIv1.0 annot-version=v1.0 MTPPDSIFNESDEELRSVLSEIRLNLKTGKSTRRPIISEEQVNLEAGMVNRNLLGRKTEFAYLALAEPWPKVSGFAKVNLSTGEVEKHIYGEGKFGGEPL FLPNTSSSSNREDDGYILAFVHDEKEWKSELQIINAMDMKVEATVELPSRVPYGFHGTFISAKDLENQAEKCM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042481 [exp]	0	1
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042482 [exp]	1.0	0.9180
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	1.4	0.8874
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	12.1	0.8534
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	13.7	0.8694
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	14.8	0.8579
					Lus10021373 [exp]	18.7	0.8682
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	20.7	0.7823
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	22.6	0.7939
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10040336 [exp]	22.8	0.7748
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	28.5	0.8433

Compare expression of checked genes

Lus10042481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.