Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78390 373 / 1e-124 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 352 / 3e-117 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 346 / 6e-115 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 323 / 3e-106 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G24220 289 / 4e-93 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G19170 167 / 7e-47 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G63520 159 / 3e-44 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G32810 52 / 3e-07 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026185 [exp] 418 / 5e-144 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10011750 [exp] 291 / 9e-94 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10023673 [exp] 285 / 3e-91 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10035696 [exp] 167 / 1e-46 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 166 / 2e-45 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 160 / 3e-44 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 160 / 4e-43 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 138 / 2e-37 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10037285 [exp] 80 / 6e-16 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393800 [exp] 389 / 1e-131 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G112400 [exp] 382 / 3e-129 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 340 / 1e-112 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.003G176300 [exp] 303 / 3e-98 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.005G069100 [exp] 162 / 1e-44 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 162 / 1e-44 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265400 [exp] 155 / 1e-42 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G151900 [exp] 156 / 2e-42 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 155 / 2e-42 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265600 [exp] 155 / 2e-42 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10042482 pacid=23153474 polypeptide=Lus10042482 locus=Lus10042482.g ID=Lus10042482.BGIv1.0 annot-version=v1.0 ATGATCGCCTCTCCTTCTTCTTCTTCTTCTTCAATCTCCCACCATCGACTCAGTCGACGATGCTCCAAAATCCAGTCCTCTTTACAAACTCCTTCCATTG CCCATTTCCCCAAACACTTTCCTCCTCCTCCTCCTCCTCCGCAAAATAAGCCGCTATTACCAGTGTTGGTGGAGGAGAAAACCAAAAGCACGCCTCCAAA ATGGAACCTTCTACAAAGAGCTGCTTCATTCGCTTTGGATGCCGTCGAATCCGCTCTTGTCTCACACGAGCGTAACCATCACCCACTCCCCAAAACCGCC CACGATCCGATTTCCGGGCATCACTTGTTTGACGGGGACGGGATGGTTCACGCCGTCACTTTCGGAAGCGGTTCTTCCGTTAGCTATGCTAGCCGGTTCA CGGAGACGAGCCGGCTGGTTCAGGAGCGGGAATTGGGCCGACCGGTTTTCCCTAAGGCCATCGGTGAGCTACACGGTCACTCCGGTATCGCGAGGCTCAT GCTCTTCTGCGCGCGCGGACTTTTCGGAATCGTCGATCCTTCCCAAGGAACCGGAGTCGCGAACGCCGGCCTCGCCTATTTCGCCGGACGCCTACTCGCT ATGTCGGAAGACGATTTGCCTTATCACGTCCGCGTACTTCCCTCCGGCGACCTGGAAACCGCCGGCCGATTTGATTTTGACGGCCAGCTTCAGAGCACGA TGATCGCCCACCCCAAAATCGACCCGGTCAGCGGCGAAATGTTTGCCCTCAGCTACGACGTCGTCAAGAAGCCGTACCTCAAGTACTTCCGATTCTCGGC GTCGGCAGAGGAAGATGGCAATCAGAAAATCGAGAAATCCCCTGATGTGGAGATAGCGTTGGATCAGCCGACGATGATGCACGATTTCGCAATAACGGAG AATTTCGTGGTGATTCCGGATCAGCAGGTGGTTTTCAAGCTGGCCGGATCAGCAGGTGGTTTGCAAGCGGCAGGAGATGATCCGAGGCGGGTCGCCGGTG ATCTACGACAAGAACAAAATCTCGCGATTCGGGATTCTGGACAAGAATGCCGTAGACGGATCGGAAATCAAATGGATTGA
AA sequence Show only first row Show all	>Lus10042482 pacid=23153474 polypeptide=Lus10042482 locus=Lus10042482.g ID=Lus10042482.BGIv1.0 annot-version=v1.0 MIASPSSSSSSISHHRLSRRCSKIQSSLQTPSIAHFPKHFPPPPPPPQNKPLLPVLVEEKTKSTPPKWNLLQRAASFALDAVESALVSHERNHHPLPKTA HDPISGHHLFDGDGMVHAVTFGSGSSVSYASRFTETSRLVQERELGRPVFPKAIGELHGHSGIARLMLFCARGLFGIVDPSQGTGVANAGLAYFAGRLLA MSEDDLPYHVRVLPSGDLETAGRFDFDGQLQSTMIAHPKIDPVSGEMFALSYDVVKKPYLKYFRFSASAEEDGNQKIEKSPDVEIALDQPTMMHDFAITE NFVVIPDQQVVFKLAGSAGGLQAAGDDPRRVAGDLRQEQNLAIRDSGQECRRRIGNQMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042482 [exp]	0	1
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042481 [exp]	1.0	0.9180
AT4G38790			ER lumen protein retaining rec...		Lus10007570 [exp]	10.2	0.7432
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10040336 [exp]	12.2	0.7511
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	13.1	0.7753
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	21.5	0.7281
					Lus10005128 [exp]	42.4	0.7418
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	45.1	0.7045
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	48.5	0.6829
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	64.6	0.7092
AT2G18540			RmlC-like cupins superfamily p...		Lus10037937 [exp]	86.0	0.6381

Compare expression of checked genes

Lus10042482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.