Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78400 297 / 7e-98 Pectin lyase-like superfamily protein (.1) AT2G33160 300 / 7e-96 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT1G43090 293 / 7e-96 Pectin lyase-like superfamily protein (.1) AT1G43080 292 / 1e-95 Pectin lyase-like superfamily protein (.1) AT2G15460 291 / 3e-95 Pectin lyase-like superfamily protein (.1) AT1G43100 291 / 5e-95 Pectin lyase-like superfamily protein (.1) AT2G15450 289 / 1e-94 Pectin lyase-like superfamily protein (.1) AT2G15470 288 / 4e-94 Pectin lyase-like superfamily protein (.1) AT2G40310 286 / 1e-93 Pectin lyase-like superfamily protein (.1) AT4G13760 285 / 3e-93 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026183 [exp] 739 / 0 AT2G33160 305 / 2e-100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) Lus10026184 [exp] 641 / 0 AT1G78400 310 / 6e-103 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 270 / 1e-87 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 258 / 8e-82 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 257 / 8e-82 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 253 / 1e-80 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 253 / 2e-80 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 252 / 3e-80 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 252 / 3e-80 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038100 [exp] 358 / 8e-122 AT1G78400 357 / 4e-121 Pectin lyase-like superfamily protein (.1) Potri.001G377700 [exp] 348 / 1e-117 AT1G78400 295 / 4e-97 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 277 / 5e-90 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 277 / 5e-90 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 277 / 5e-90 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 277 / 9e-90 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 271 / 8e-88 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 270 / 2e-87 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 270 / 2e-87 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 270 / 2e-87 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10042483 pacid=23153985 polypeptide=Lus10042483 locus=Lus10042483.g ID=Lus10042483.BGIv1.0 annot-version=v1.0 ATGGATTTGGTTATGGGTTTTGCCAAGCTTTCCGTTCTGTTACTAGTGCTTGCTTCCATTAGAGGCGGCATTGCCACGGATGACGACGACGATGATGATT CAAACGCCAAGGTGTTTAATGTTATGAACTACGGTGCCAGAGCAGACGGCAGGACTGATAACAGCCAGGCGTTTCTGAGAGCATGGAGAGAAGGGTGTGA ATGGAATGGCAAGGCGAGGATTTTGGTGCCGGCAGGACATTATATGTGCGACGCAGTGGAGTTCTCTGGACCTTGCAGAGGCTCAATGGCTTTTGTAATG AAAGGTCTCTTAACGCCTCCTGACAAGCTGAAACACATCGAAGGCACTAACTGCTGGGTCGCTTTTAAATACATTGACAACTTCCTGCTTTCGGGTCACG GCACCTTCGATGCTCGCGGCTACACTTCTCCCACTCCTAAAGAACGCGATCATTCGTTGAATTTCCGTTTCATAAACAACGGAACCATACACCATGTCCG ATCGGTCGATGCTCGAAACGTGCACATAGAGCTTTTCGGGTGCAACAACATGTTGTTGAGGAACATTATGATCAAAGCACCAGGAGATAGCCACAACACC GACGGAATCAAGTTCGGATCGTGCACTAACATAAAGCTCGAAAACTCTGTGATTGGAACAGGGGACGACTGCGTCGCCATCCTGGGCGGGACCCACAACC TCGACATCAGCAAAGTGTTTTGCGGTCCGGGCCACGGAATTAGCATTGGGAGCATGGGTTATTACCCTAACAACAACAACGACATCGTTACGGGAGTGAC AGTTAGGGACTGCAGTTTCCAAAACACTTCTTACGGCGTCAGGATTAAGACTTGGGCCTCTCCCTACGAGGGACTTGCGGCCAATATAAGCTACAGTAAT ATTCGGATGATGGGCGTCCAGAATCCGATCATCATTGATCAGTTCTACTGCCCCGAGGCGAATTGCAATTCGAATGTGCAGTCGCACGTTCGAGTCCAGA ATGTGACGTACGACAACATTTGGGGCACGTCGCAGAGGGATGTGGCGATGAAGTTGAACTGTAGTTCCACGTTTGGTTGCAAAGGGATAGTGATGAAGAA TATCAATCTGGTACAAGTAAATGGCTCGTCTGCTAATGCAATGTGCAACAACGTAGATAGCAAGACCTACGGCGTAAGAAAACCAGCTTGCGCCTAG
AA sequence Show only first row Show all	>Lus10042483 pacid=23153985 polypeptide=Lus10042483 locus=Lus10042483.g ID=Lus10042483.BGIv1.0 annot-version=v1.0 MDLVMGFAKLSVLLLVLASIRGGIATDDDDDDDSNAKVFNVMNYGARADGRTDNSQAFLRAWREGCEWNGKARILVPAGHYMCDAVEFSGPCRGSMAFVM KGLLTPPDKLKHIEGTNCWVAFKYIDNFLLSGHGTFDARGYTSPTPKERDHSLNFRFINNGTIHHVRSVDARNVHIELFGCNNMLLRNIMIKAPGDSHNT DGIKFGSCTNIKLENSVIGTGDDCVAILGGTHNLDISKVFCGPGHGISIGSMGYYPNNNNDIVTGVTVRDCSFQNTSYGVRIKTWASPYEGLAANISYSN IRMMGVQNPIIIDQFYCPEANCNSNVQSHVRVQNVTYDNIWGTSQRDVAMKLNCSSTFGCKGIVMKNINLVQVNGSSANAMCNNVDSKTYGVRKPACA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33160			glycoside hydrolase family 28 ...		Lus10042483 [exp]	0	1

Compare expression of checked genes

Lus10042483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.