Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65000 341 / 2e-116 Nucleotide-sugar transporter family protein (.1.2) AT4G35335 59 / 1e-09 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026182 [exp] 520 / 0 AT5G65000 446 / 1e-158 Nucleotide-sugar transporter family protein (.1.2) Lus10013845 [exp] 55 / 4e-08 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10026562 [exp] 54 / 1e-07 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075600 [exp] 350 / 4e-120 AT5G65000 461 / 2e-164 Nucleotide-sugar transporter family protein (.1.2) Potri.007G092800 [exp] 344 / 1e-117 AT5G65000 429 / 6e-152 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 53 / 1e-07 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10042484 pacid=23153911 polypeptide=Lus10042484 locus=Lus10042484.g ID=Lus10042484.BGIv1.0 annot-version=v1.0 ATGGCGGCGACACGGGTCAGAGGTCCGAGACCTGATACCAATTCGCAGAATATGAGCTCCGGAGTCTTAATCTGCTGTTTGTTACTCACTCTTCAATATG GAGCTCAACCTCTCATTTCCAAGTATTGCACCAGGTATTCGCAAGCTTCTTCTACTGTTTGCTTTTCCTATCCACCGTCATCGCTTTTCCGAGTAGATAC TTTCCTCCAAATCTGTCCTAAATTTGGAGGTGTTCGGCGTATCACCATTCAGATATGGGCGCGGATCATCCATAATGCACCAGAAGTTATTGTGACTACA TTAGTCTTGTCATGCGAGATCATTAAGGTTATATGTGCAACAATTGTCATGGCTACAGATGGAAGCTTGAAGAAATTATCCAAGGAGTGGAATTTGGTCA ACTCATTGACGGCATCAGGGCTTCCTGCGGCAATTTATGCACTGCAAAACAGCTTGCTCCAGATTTCTTACAAGAATCTTGATTCGCTAACGTTTACAAT ACTGAACCAGACAAAGATATTTTTTACCGCCTTGTTCATGTATATAATATTAAGGCAGAAGCAGTCAACTCCGCAAATTGGAGCATTGTTCTTATTAATC ATGGCTGCTGTTCTTCTTAGTGTCGGGGAAGGCTCTAGCAAAAAATCTACTAGCATTAACCCTGATCAGATTTTGTATGGAATCGTGCCTGTCCTGGTTG CTTCAGTTCTCTCTGGCTTAGCATCAGCTTTGTGTCAATGGGCTTCTCAGGTTAAGAAACATTCATCATACCTGATGACAATTGAAATGTCTATTTTTGG GAGCATGTGCTTATTAGTCAGCATGGCAAAGTCTCCAGATGGAGAGGCGATCAGCAAAAAAGGGTTCTTTTATGGGTGGACTTCGTTAACTTTGTTCCCA GTTCTATTAAACTCCGTTGGAGGAATCCTAGTTGGGGTTGTGACAAGCAAGGCAGGAGGGGTTAGAAAGCTGCTGCATCCAGGCCAGCACAATAATAGTA AGTTTGGAGGAGGTCGTCATAGTTTGCCTCGTTCTGATTACCCACCATTAACGGAGAAGAAGAAACTCGGCGTCCAAGAATCCTCAAGGACCAGTTGGCC TCTGCTGAAGCTCAACAAGAACTAG
AA sequence Show only first row Show all	>Lus10042484 pacid=23153911 polypeptide=Lus10042484 locus=Lus10042484.g ID=Lus10042484.BGIv1.0 annot-version=v1.0 MAATRVRGPRPDTNSQNMSSGVLICCLLLTLQYGAQPLISKYCTRYSQASSTVCFSYPPSSLFRVDTFLQICPKFGGVRRITIQIWARIIHNAPEVIVTT LVLSCEIIKVICATIVMATDGSLKKLSKEWNLVNSLTASGLPAAIYALQNSLLQISYKNLDSLTFTILNQTKIFFTALFMYIILRQKQSTPQIGALFLLI MAAVLLSVGEGSSKKSTSINPDQILYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIFGSMCLLVSMAKSPDGEAISKKGFFYGWTSLTLFP VLLNSVGGILVGVVTSKAGGVRKLLHPGQHNNSKFGGGRHSLPRSDYPPLTEKKKLGVQESSRTSWPLLKLNKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65000			Nucleotide-sugar transporter f...		Lus10042484 [exp]	0	1
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	15.3	0.6971
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	32.0	0.6927
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	40.8	0.6425
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	50.9	0.6334
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	51.2	0.6634
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	82.3	0.6572
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	99.7	0.6489
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	101.6	0.6418
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	117.4	0.6500

Compare expression of checked genes

Lus10042484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.