Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14690 580 / 0 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 568 / 0 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 559 / 0 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14610 557 / 0 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14660 556 / 0 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14650 548 / 0 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14620 542 / 0 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14630 541 / 0 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G26710 405 / 2e-136 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G17060 388 / 2e-130 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042487 [exp] 822 / 0 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 802 / 0 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026177 [exp] 665 / 0 AT3G14690 514 / 6e-180 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10033044 [exp] 383 / 2e-127 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 346 / 1e-113 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 345 / 3e-113 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 331 / 1e-107 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10010821 [exp] 326 / 2e-105 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10025756 [exp] 325 / 4e-105 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098800 [exp] 594 / 0 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 591 / 0 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 588 / 0 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 587 / 0 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 585 / 0 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 581 / 0 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101250 [exp] 542 / 0 AT3G14690 568 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G117600 [exp] 444 / 4e-152 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.006G154500 [exp] 410 / 2e-138 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 409 / 5e-138 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042486 pacid=23153886 polypeptide=Lus10042486 locus=Lus10042486.g ID=Lus10042486.BGIv1.0 annot-version=v1.0 ATGCAAGTGGTGGTATTGGCCTTGGTGATAGTAGGAATAACGACATGGGCGTTGAAGGTTTTGAACTGGGTTTGGTTCAAACCCAAGAGGCTGGAGAGGT ACCTCAGAAATCAAGGGTTCGACGGCAGGTGGTATCGAGTTTTGAAAGGAGACGTAAAGGAAGATGTTGAGATGTCGAAAGAAGCGAGATCAAGACACTT TGACTTCTCCCAAGATCTCGCCTTGCGCGTTCTTCCTCTGCATTACCACACCGTCAGGATTTACGGTAAAAATTCATTTACTTGGCTTGGACCGGTCCCA AGGGTGCACGTAATGAATCCAGTAGATATAAAAGAAGTGTTCACAAAAATTGACGATTATCCAAAAGCGAAGCGAAATCCACTCACAAGAATGTTAGCTT CGGGACTTGGATTCTACAACGGCGAGAAATGGGCACAGCACAGAAGAATCCTCAACCCTGCTTTCCATCAGGAGAAACTCAAGCTGATGGTGCCAGTGTT CTATCAATGCTGCATGGAAACTACTGACGTGTGGGAACAGCTAGTGGCTTCCAATGGGGGATCATCTACAGAACTGGACGTATGGCCATATATCCAGAGC ATGACATGCGATGTTATTTCCAAAACAGCTTTTGGAAGCAGTTACCAGGAAGGGAAAAGAATCTTCGATCTCCTCAAAGAACAATCTGTTGTTGCAATGC AGATTGTGCAACAAGTTTATATTCCAGGTTGGAGTCCTCAAAACCTTCCGATCCGCAGGTTTTTACCGACGAAACTTAACACAAGGATGAAGCAAGCTTA CATGGGGATCCAAGAATCACTAAAGGGGATCATTAACAAGCGTGAGAAGGCAATGATGACAAGTGACATGGCGCCTGACAACACCGACTTACTCGGTTTA ATGATGGAATCCAATCGTGCTACAGAGGGCATTGCAATGACAATAGAGGAAGTGATTGAGGAATGCAAGTTGTTCTACTTCGCCGGCCAAGAGACCACTT CTGTCGTCCTTGTTTGGACTATGATCCTCCTAGGCAAGTACCCCGAATGGCAAGAACGCGCGAGACTCGAAGTCTCACGAGTCTTGGGCGATAATATCAA TGATGTCCCTGATCACACTGATCTTGGCCGTCTCAAAATCGTAACTATGATTTTGCACGAGGTTCTAAGATTGTATCCGCCGATTGTGATGTTAAATCGA GCAGTTGAGAAAGACACAAAACTGGGTAATGTTACTCTGCCGTCAGGGGTTCACATTGTTCTGCCCACAGTCCTAATTCAAACAGATCCTGAGATTTGGG GGAAAGATGCTGGCGAGTTCAACCCTAAAAGATTCTCGGAGGGAGTTTCTCAAGCAACAAAGAATCAACAAGTTGCCTACTATCCATTTGGATGGGGACC CAGAATATGCATTGGCCAGAACTTTGCTCTTCTGGAGATAAAGATGGCCTTGGCGATCATTTTGAGGAGGTTTTCTTTTGAGCTTTCTTCATCCTATGTT CATGCTCCATCCACGGAAGCCATAACTCTTCATCCACAATTTGGTGCTCCACTTATCATTCACAGACTTGAGAACTAA
AA sequence Show only first row Show all	>Lus10042486 pacid=23153886 polypeptide=Lus10042486 locus=Lus10042486.g ID=Lus10042486.BGIv1.0 annot-version=v1.0 MQVVVLALVIVGITTWALKVLNWVWFKPKRLERYLRNQGFDGRWYRVLKGDVKEDVEMSKEARSRHFDFSQDLALRVLPLHYHTVRIYGKNSFTWLGPVP RVHVMNPVDIKEVFTKIDDYPKAKRNPLTRMLASGLGFYNGEKWAQHRRILNPAFHQEKLKLMVPVFYQCCMETTDVWEQLVASNGGSSTELDVWPYIQS MTCDVISKTAFGSSYQEGKRIFDLLKEQSVVAMQIVQQVYIPGWSPQNLPIRRFLPTKLNTRMKQAYMGIQESLKGIINKREKAMMTSDMAPDNTDLLGL MMESNRATEGIAMTIEEVIEECKLFYFAGQETTSVVLVWTMILLGKYPEWQERARLEVSRVLGDNINDVPDHTDLGRLKIVTMILHEVLRLYPPIVMLNR AVEKDTKLGNVTLPSGVHIVLPTVLIQTDPEIWGKDAGEFNPKRFSEGVSQATKNQQVAYYPFGWGPRICIGQNFALLEIKMALAIILRRFSFELSSSYV HAPSTEAITLHPQFGAPLIIHRLEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	0	1
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	7.5	0.8982
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	8.5	0.9293
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	8.7	0.9152
AT4G39230			NmrA-like negative transcripti...		Lus10040442 [exp]	12.1	0.9207
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	12.8	0.9283
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	12.8	0.8819
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	15.1	0.9110
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	15.9	0.8846
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	16.9	0.9101
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	19.8	0.8695

Compare expression of checked genes

Lus10042486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.