Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14930 91 / 6e-24 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G23680 87 / 3e-22 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G23670 86 / 7e-22 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G14940 85 / 1e-21 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G14950 84 / 4e-21 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G14960 84 / 4e-21 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G01530 82 / 1e-20 ZCE2, MLP329 \(Zusammen-CA\)-enhanced 2, MLP-like protein 329 (.1) AT2G01520 79 / 3e-19 ZCE1, MLP328 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) AT4G14060 79 / 3e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G26450 77 / 1e-18 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042489 [exp] 221 / 4e-75 AT1G14960 104 / 5e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033397 [exp] 108 / 1e-30 AT1G14950 121 / 1e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008932 [exp] 102 / 3e-27 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008930 [exp] 100 / 3e-27 AT5G28010 126 / 2e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028887 [exp] 99 / 6e-27 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) Lus10026175 [exp] 85 / 1e-20 AT1G78520 114 / 2e-32 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10020498 [exp] 69 / 3e-15 AT1G70830 160 / 7e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012742 [exp] 67 / 2e-14 AT1G70830 158 / 6e-50 MLP-like protein 28 (.1.2.3.4.5) Lus10012466 [exp] 67 / 3e-14 AT1G70830 161 / 3e-51 MLP-like protein 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131100 [exp] 117 / 3e-34 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.008G131200 [exp] 107 / 3e-30 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131300 [exp] 98 / 2e-26 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G111000 [exp] 75 / 1e-17 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051100 [exp] 71 / 6e-16 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.017G051200 [exp] 66 / 2e-14 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10042490 pacid=23153863 polypeptide=Lus10042490 locus=Lus10042490.g ID=Lus10042490.BGIv1.0 annot-version=v1.0 ATGGCAATGAAGGGGAAACTGGAGAGTGTGTTGGGACTGAAAGCATCTGCCGATGAGTTTTACAAAGTGTTCAAGCACACAGTCCACCACATCCCCAACC ACACTCCAAACAACATCAATGCCGTTGATCTTCACCAAGGCGAATGGCATACTCCTTCCTGTCTCAAACAATGGACTTATACCCTCAATGGGAAGAAGGA AGTGTTGAAGGAGAAGATGGAGATAGACGACGAGAAGAAGACAGTTACAATAACCGGCGTGGATGGAGACCCAATGAAGTTATACAAAGTGTACGTTGTG AAGCTTGAGGTTCAGCCCAAAGAGGATGGCAATGGCAGCTGCGTCATCATTACGCTCACCTACGAGAAACTTAACCCAACTTCTCCGCCGGCCTATAAGT ACCTGGATTTCCTCGAATCTGTTACTCTGGACATCAGCCATTCTGTCTCCTCCGCCGCCGCATGA
AA sequence Show only first row Show all	>Lus10042490 pacid=23153863 polypeptide=Lus10042490 locus=Lus10042490.g ID=Lus10042490.BGIv1.0 annot-version=v1.0 MAMKGKLESVLGLKASADEFYKVFKHTVHHIPNHTPNNINAVDLHQGEWHTPSCLKQWTYTLNGKKEVLKEKMEIDDEKKTVTITGVDGDPMKLYKVYVV KLEVQPKEDGNGSCVIITLTYEKLNPTSPPAYKYLDFLESVTLDISHSVSSAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14930			Polyketide cyclase/dehydrase a...		Lus10042490 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	2.6	0.9028
					Lus10010253 [exp]	3.7	0.9025
					Lus10027774 [exp]	4.6	0.8940
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10021078 [exp]	5.0	0.8840
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10040637 [exp]	7.3	0.8049
AT3G57930			unknown protein		Lus10031806 [exp]	8.0	0.8908
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10041883 [exp]	10.7	0.8492
					Lus10021851 [exp]	12.5	0.8810
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	13.5	0.8810
					Lus10008791 [exp]	14.4	0.8810

Compare expression of checked genes

Lus10042490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.