Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17050 545 / 0 SPS2 solanesyl diphosphate synthase 2 (.1) AT1G78510 539 / 0 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT2G34630 226 / 1e-69 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT4G36810 125 / 3e-32 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 124 / 1e-31 Terpenoid synthases superfamily protein (.1) AT3G14510 116 / 1e-29 Polyprenyl synthetase family protein (.1) AT2G18640 117 / 2e-29 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G20160 111 / 3e-27 Terpenoid synthases superfamily protein (.1) AT3G32040 109 / 2e-26 Terpenoid synthases superfamily protein (.1) AT2G23800 107 / 1e-25 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005570 [exp] 640 / 0 AT1G78510 564 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10013703 [exp] 622 / 0 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10023287 [exp] 233 / 1e-72 AT2G34630 541 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Lus10022499 [exp] 124 / 1e-31 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 123 / 3e-31 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 114 / 4e-28 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 108 / 1e-25 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 106 / 3e-25 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 99 / 7e-24 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380500 [exp] 597 / 0 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101301 [exp] 423 / 1e-146 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1) Potri.011G099500 [exp] 414 / 3e-143 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101200 [exp] 390 / 5e-134 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.010G138800 [exp] 226 / 2e-69 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.006G135300 [exp] 225 / 2e-69 AT2G34630 592 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.004G090600 [exp] 124 / 8e-32 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 124 / 1e-31 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 119 / 1e-29 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 117 / 2e-29 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10042491 pacid=23153631 polypeptide=Lus10042491 locus=Lus10042491.g ID=Lus10042491.BGIv1.0 annot-version=v1.0 ATGATGTCATTAACATGCCATACTCTTGATATTGGAAGGAGCGTGGTTGATTACGTGGGTTCCGCCGTCTCATCTTCTAAGGCATTCATGCAGCATGAAT CATGCTCGAACAGATTGGACTTTCCCTCTTCCATTTCCAGGAGCTCTACTAGTGTCCGCACCGCTGCCGGATTGGTAACTCTCCGTCTTGATTCTGTTCG CTGTAGAAGCGTTTCAACAAAGAGCACCGATAATGGAACTTCAGAAGTCTCACTGAACGTTCAAAGAGGTCGAATTTCGTTGGCGGAGTTGTTTGAAGTT GTGGCTGATGACCTATTGATCCTTAACGAAAATCTGAAAACGTTGAATTGGTCTAACCTCAACCTTAAAAGATTGCGCCAGATTGTTGGTGCAGAAAATC CTGTTTTGATGTCTGCTGCTGAGCAGATATTTGGTGCAGGCGGGAAGAGAATGCGGCCAGCTCTTGTTTTCCTGGTGTCCTGGGCAACAGCTCAGATGTT GGGTTTAAAGGAACTTACAACAAATCACCGGCGTCTTGCTGAGATCATTGAGATGATCCATACAGCAAGCCTTATACATGATGATGTATTGGATGAAAGT GACTTGAGAAGGGGGAAAGAAACTGTTCATCAGCTTTACGGTACGAGAGTAGCAGTACTTGCAGGAGACTTTATGTTTGCTCAGTCATCATGGTACTTGG CGAATCTTGAAAACCTTGAAGTCATCAAACTTATTAGCCAGGTTATTAAAGATTTCGCTAGCGGGGAAATAAAGCAAGCAACCAGTTTGTTCAACTGTGA TCTCGAACTCGAAGAATACTTAATCAAGAGCTATTACAAGACAGCATCTTTAGTTGCAGCTAGCACCAAAGGAGCTGCCATTTTCAGTGGTGTGGACAGC AGTGTGGCCCAGAGTATGTTTGAATATGGAAAGAATCTCGGATTATCGTTCCAAGTCGTAGATGACATACTTGATTTCACTCAGTCGGCAGAGCTGTTGG GGAAGCCTGCTGGAAGCGACTTGGGAAAGGGGAACCTAACTGCACCAGTCATATTTGCTCTACAGAAAGAGCCCAAACTTAGAGATATTATCGAGTCCGA ATTCACGGAGGAGGGCTCTCTCCAAGATGCTATTGATTTGGTTAAGAGAAGTGGGGGAATTCGGAGGGCACAGGAGCTGGCCAAGGAAAAAGCTGACATT GCAATCCAGAATCTGGAATGTCTTCCTCAGAGCTCATTCCGTTCTGCTCTTGAAGAAATCGTGTTGTATAATCTCGAGAGAATCGAGTAG
AA sequence Show only first row Show all	>Lus10042491 pacid=23153631 polypeptide=Lus10042491 locus=Lus10042491.g ID=Lus10042491.BGIv1.0 annot-version=v1.0 MMSLTCHTLDIGRSVVDYVGSAVSSSKAFMQHESCSNRLDFPSSISRSSTSVRTAAGLVTLRLDSVRCRSVSTKSTDNGTSEVSLNVQRGRISLAELFEV VADDLLILNENLKTLNWSNLNLKRLRQIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSWATAQMLGLKELTTNHRRLAEIIEMIHTASLIHDDVLDES DLRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQATSLFNCDLELEEYLIKSYYKTASLVAASTKGAAIFSGVDS SVAQSMFEYGKNLGLSFQVVDDILDFTQSAELLGKPAGSDLGKGNLTAPVIFALQKEPKLRDIIESEFTEEGSLQDAIDLVKRSGGIRRAQELAKEKADI AIQNLECLPQSSFRSALEEIVLYNLERIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17050		SPS2	solanesyl diphosphate synthase...		Lus10042491 [exp]	0	1
AT1G67910			unknown protein		Lus10023630 [exp]	1.0	0.9254
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	3.2	0.9227
AT2G34540			unknown protein		Lus10028123 [exp]	6.9	0.8931
AT2G41200			unknown protein		Lus10032687 [exp]	6.9	0.8890
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	7.9	0.8912
AT3G44716			unknown protein		Lus10020554 [exp]	8.4	0.8911
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	9.5	0.8625
AT3G26880			Plant self-incompatibility pro...		Lus10038163 [exp]	9.5	0.8974
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	9.9	0.8893
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	11.0	0.9074

Compare expression of checked genes

Lus10042491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.