Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14740 224 / 1e-73 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G31650 84 / 2e-19 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 78 / 5e-17 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT3G61740 72 / 6e-15 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 64 / 3e-12 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 62 / 1e-11 SDG16, ATX4 SET domain protein 16 (.1) AT1G77800 53 / 2e-08 PHD finger family protein (.1.2) AT4G14700 40 / 0.0006 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038142 [exp] 320 / 2e-111 AT3G14740 315 / 1e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10025508 [exp] 72 / 4e-15 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10026725 [exp] 71 / 2e-14 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10024777 [exp] 65 / 2e-12 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2) Lus10009785 [exp] 61 / 6e-11 AT1G77800 388 / 3e-115 PHD finger family protein (.1.2) Lus10019026 [exp] 52 / 5e-08 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10010121 [exp] 50 / 1e-07 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 50 / 3e-07 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 47 / 3e-06 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103100 [exp] 255 / 9e-86 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.001G382500 [exp] 251 / 9e-84 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G146300 [exp] 77 / 6e-17 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 77 / 1e-16 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G098400 [exp] 71 / 2e-14 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 70 / 2e-14 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.002G089400 [exp] 69 / 4e-14 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.005G171800 [exp] 68 / 1e-13 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.012G013900 [exp] 64 / 4e-12 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 62 / 9e-12 AT5G53430 1322 / 0.0 SET domain group 29 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042494 pacid=23153677 polypeptide=Lus10042494 locus=Lus10042494.g ID=Lus10042494.BGIv1.0 annot-version=v1.0 ATGGTTCACACCACCTGTTACAGAAATCCGTTAATCAAAGGCATCCCAGAAGGAGACTGGTTTTGTGAAGAGTGCTCTGTTTCTTCTAAAGATGAAAAGG GGAAGCTCTGTTGCTGCCTTTGCCCAAATGAAGGCGGGGGGTTGACACCTACAACAAGGGAAGGGAGATGGGCTCATATCGTCTGCGCGCTTTTGATACC GGAGGTGTTCTTTGAGAATCCAGATGGCCGAGAAGGGATTAATGCCTCCCAAGTTCCTAAGAGGAGATGGCAACAGAGATGCTATATATGCAAGAGCAGG AAAGGGTGCGTTATTGAGTGCTCTGAGCCCAAATGTCCAATGGGTTTCCATATTACTTGTGGGTTGAAGGAAGATTTGAGCATCGAGTATAAGCAAGGGA GTAAGAGTAAGGAAGCCGCCATTGTTGCTGGCTTCTGCAGGACGCACACCGAGCTGTGGGAAAAGCAGCAAGAGACGGGGAATTTCAAGATTGTGGCCAG AGGAAGCTAA
AA sequence Show only first row Show all	>Lus10042494 pacid=23153677 polypeptide=Lus10042494 locus=Lus10042494.g ID=Lus10042494.BGIv1.0 annot-version=v1.0 MVHTTCYRNPLIKGIPEGDWFCEECSVSSKDEKGKLCCCLCPNEGGGLTPTTREGRWAHIVCALLIPEVFFENPDGREGINASQVPKRRWQQRCYICKSR KGCVIECSEPKCPMGFHITCGLKEDLSIEYKQGSKSKEAAIVAGFCRTHTELWEKQQETGNFKIVARGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	0	1
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	2.4	0.8936
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	4.6	0.8949
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	6.9	0.8929
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10007777 [exp]	13.4	0.8828
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	18.3	0.8845
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	19.6	0.8478
					Lus10027011 [exp]	22.4	0.8508
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	25.5	0.8381
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	29.0	0.8695
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	32.0	0.8667

Compare expression of checked genes

Lus10042494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.