Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18360 461 / 2e-164 Aldolase-type TIM barrel family protein (.1.2) AT3G14420 458 / 1e-163 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 452 / 4e-161 Aldolase-type TIM barrel family protein (.1.2.3) AT3G14130 311 / 1e-105 Aldolase-type TIM barrel family protein (.1) AT3G14150 300 / 4e-101 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023302 [exp] 491 / 2e-176 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10038507 [exp] 488 / 2e-175 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10005590 [exp] 458 / 3e-163 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 456 / 3e-162 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038144 [exp] 358 / 4e-125 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 301 / 2e-101 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 297 / 6e-100 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10013173 [exp] 179 / 2e-56 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10037208 [exp] 174 / 1e-52 AT4G18360 303 / 6e-103 Aldolase-type TIM barrel family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065200 [exp] 457 / 3e-163 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 456 / 1e-162 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 455 / 3e-162 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069400 [exp] 311 / 1e-105 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069600 [exp] 310 / 3e-105 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 296 / 8e-100 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10042495 pacid=23153723 polypeptide=Lus10042495 locus=Lus10042495.g ID=Lus10042495.BGIv1.0 annot-version=v1.0 ATGCCCATCATGATTGCTCCTACTAGTATGCAGAAAATGGCTCACCCTGATGGGGAGTATTCAACAGAAAGAGCAGCTTCAGCAGCAGGCACCATTATGA CATTGTCCTCAATGGCTACATCCAGTATTGAAGAGGTTGCTTCAACTGGTCCTGGCATTCGCTTCTTCCAACTCTATGTATACAAAGACAGGAATGTGGT TACACAGTTGGTAAAAAGAGCTGAAAGAGCCGGTTTCAAGGCGATTTCACTTACTGTTGACACTCCAAGACTCGGCCGAAGAGAATGTGATATAAAGAAA AGGTTTGCTTTGCCAGGCAATTTGACTCTCGAAAACTTTGAAGGGCTGGACTTGGGAAAAATAGACAAGACCAGTGACTCAGGATTGGCCTCCTACGTTG CTGGCCAAATTGACCGGAAGCTTAGCTGGAAGGGGTACTTTACTGCTGAAGATGCGAGGCTAGCAGTACAAAATGGAGCTGCAGGAATCATTGTGTCCAA TCATGGAGCAAGCCAGCTCGATTATATACCCGCCACCATCACAGCTCTGGAAGAGGTAGTGAAAGCTGCACAAGGCAGAGTTCCCGTGTTCTTGGATGGA GGAGTTTGTCGAGGGACCGACGTGTTCAAGTCACTGGCACTGGGAGCTAGTGATGTATTTATTGGAAGGCCGGTGGTGTTCTCGTTGGCAGCCGACGGGG AAGGAGGAGTGAGGAAAGTGCTTCAGTTGCTCAAGGATGAGCTTGAATTGACAATGGCGTTAAGCGGATGCACTTCACTCAACGAGATTTGTCGCAACCA TATTGTCACTGACTGGGACGTCCCTCCTCGCACCCTGGCTAGCAGCAGATTATGA
AA sequence Show only first row Show all	>Lus10042495 pacid=23153723 polypeptide=Lus10042495 locus=Lus10042495.g ID=Lus10042495.BGIv1.0 annot-version=v1.0 MPIMIAPTSMQKMAHPDGEYSTERAASAAGTIMTLSSMATSSIEEVASTGPGIRFFQLYVYKDRNVVTQLVKRAERAGFKAISLTVDTPRLGRRECDIKK RFALPGNLTLENFEGLDLGKIDKTSDSGLASYVAGQIDRKLSWKGYFTAEDARLAVQNGAAGIIVSNHGASQLDYIPATITALEEVVKAAQGRVPVFLDG GVCRGTDVFKSLALGASDVFIGRPVVFSLAADGEGGVRKVLQLLKDELELTMALSGCTSLNEICRNHIVTDWDVPPRTLASSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	0	1
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	1.0	0.9253
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	1.4	0.8683
					Lus10014629 [exp]	7.1	0.8427
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034816 [exp]	7.5	0.7195
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	8.7	0.8180
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	9.7	0.8150
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	9.8	0.7650
AT2G30880			Pleckstrin homology (PH) domai...		Lus10027607 [exp]	10.2	0.6432
					Lus10001379 [exp]	10.4	0.7769
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	10.7	0.8138

Compare expression of checked genes

Lus10042495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.