Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14760 62 / 8e-12 unknown protein AT1G71740 45 / 5e-06 unknown protein AT1G49000 43 / 4e-05 unknown protein AT3G18560 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038145 [exp] 147 / 8e-43 AT3G14760 70 / 1e-14 unknown protein Lus10029742 [exp] 47 / 2e-06 AT1G71740 82 / 5e-21 unknown protein Lus10042773 [exp] 47 / 2e-06 AT1G71740 81 / 8e-21 unknown protein Lus10034266 [exp] 44 / 5e-05 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 43 / 7e-05 AT1G71740 51 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103500 [exp] 75 / 3e-16 AT3G14760 121 / 6e-35 unknown protein Potri.001G382800 [exp] 71 / 9e-15 AT3G14760 109 / 3e-30 unknown protein Potri.005G198200 [exp] 44 / 2e-05 AT1G71740 112 / 5e-33 unknown protein Potri.010G130600 [exp] 40 / 0.0005 AT1G49000 77 / 2e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042496 pacid=23153491 polypeptide=Lus10042496 locus=Lus10042496.g ID=Lus10042496.BGIv1.0 annot-version=v1.0 ATGGGCGGCGTATGGATCAGCAAAGCAGAGGAGAAGCTGAAGCACATCATAACAACCACTCCAGATTCCACACTAATAGCCATCTTCACTCTCTTCACCA TTGCCCTCTTCGCCGTCATACTAGGAATTCTTATTCTCATAATTAGGAAAAGAAAATCCCAGCAGCGCAACAGCAGCCGGGTGCAGCAAAGTGAACGTCG TATGCTGATGGATATGGAATATTATGGGTGGTCGACAGAGGAAGATGGTCATGATGATGGTAATGGTGTGGGTTCGAAGAGATGGTTGACGATAAGGAAG GTGTTGATGAGCTCGATGCGATGGAGTGAAAGCAGCAGGTGGGATGAAGAAGAGGAATTGATAATTAGTAGCAGCATAATTAATAGCTGCTGTAGTAATA GTAATAACAGCTTTTGTAGTCTTACTTGTTCGAGGGAGGAGCCGCCGAGAGCAGCTGTTAGGCCGGAGATTCGGATTTTGGAGCCAACAATTGATAATAA GAAATCAAGAGCTGCTGCAGTTTTGAAGAAGGTGATCAAAGGACCATTGCTAGGAAAGGAGGTTGTAAGAGGAGGAGGCTTGTTTGATGATGAGTGGAGG AAGAAGAGGCAGGGGATCATGAGTAGTAGCAGTAGTAGTAGTCAGGTGGAGGCGGTGTGGCAGAGGCCGATATTGATGGGGGGGAAATGTGAGCTACCAA AGCATAGTGGCCTTATCTTGTACGATCAAACTGGTCGCCCGCTGCATCACTCTGCCTCCTGCTCTCAATATCAACATCTTCATCACCCAACACCAGGAAA CAAGAGATGCAAGGGGAGAACAACTCTGCAGGATCTGATGTAA
AA sequence Show only first row Show all	>Lus10042496 pacid=23153491 polypeptide=Lus10042496 locus=Lus10042496.g ID=Lus10042496.BGIv1.0 annot-version=v1.0 MGGVWISKAEEKLKHIITTTPDSTLIAIFTLFTIALFAVILGILILIIRKRKSQQRNSSRVQQSERRMLMDMEYYGWSTEEDGHDDGNGVGSKRWLTIRK VLMSSMRWSESSRWDEEEELIISSSIINSCCSNSNNSFCSLTCSREEPPRAAVRPEIRILEPTIDNKKSRAAAVLKKVIKGPLLGKEVVRGGGLFDDEWR KKRQGIMSSSSSSSQVEAVWQRPILMGGKCELPKHSGLILYDQTGRPLHHSASCSQYQHLHHPTPGNKRCKGRTTLQDLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14760			unknown protein		Lus10042496 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	2.2	0.8258
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	4.5	0.8123
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000223 [exp]	5.2	0.7407
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10040403 [exp]	7.1	0.7302
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	9.5	0.7866
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	13.4	0.8108
AT5G25590			Protein of unknown function (D...		Lus10007676 [exp]	20.3	0.7839
AT5G11630			unknown protein		Lus10002035 [exp]	22.8	0.7066
AT4G23020			unknown protein		Lus10006336 [exp]	23.6	0.7327
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	24.8	0.7211

Compare expression of checked genes

Lus10042496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.