Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78570 1227 / 0 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 1164 / 0 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G14790 1163 / 0 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G63000 506 / 2e-177 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT4G20460 117 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G28760 109 / 7e-26 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 109 / 8e-26 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT5G44480 109 / 2e-25 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46440 108 / 2e-25 UXS5 UDP-XYL synthase 5 (.1.2) AT1G30620 107 / 1e-24 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038146 [exp] 1377 / 0 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10005560 [exp] 1231 / 0 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 1121 / 0 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 1107 / 0 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 984 / 0 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 957 / 0 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10006719 [exp] 503 / 4e-176 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10014147 [exp] 501 / 2e-175 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10040847 [exp] 117 / 2e-28 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103700 [exp] 1255 / 0 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 1246 / 0 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 1080 / 0 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.003G120000 [exp] 504 / 1e-176 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.001G112000 [exp] 502 / 1e-175 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.010G207200 [exp] 114 / 2e-27 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 113 / 4e-27 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.008G053100 [exp] 113 / 4e-27 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.011G156100 [exp] 109 / 3e-25 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 107 / 7e-25 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04321 [flax] [poplar] RmlD_sub_bind RmlD substrate binding domain CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10042497 pacid=23153932 polypeptide=Lus10042497 locus=Lus10042497.g ID=Lus10042497.BGIv1.0 annot-version=v1.0 ATGTCTTCATATACCCCAAAGAACATCTTAATTACTGGCGCTGCTGGGTTCATCGCATCTCATGTTTGCAATAGACTAATCCGCAACTACCCGGATTACA AAATCGTGGTGTTGGACAAGCTTGATTATTGCTCCAATCTGAAAAACCTCCTTCCTTCTAAACCTTCCCCCAACTTCAAATTTGTCAAGGGGGACATTGG CAGCGCTGACCTTGTCAACTTCCTCCTCATTACTGAATCTATTGATACAATTATGCACTTTGCTGCCCAAACCCATGTCGACAACTCCTTTGGTAACAGC TTTGAGTTTACCAAGAACAACATCTATGGCACCCATGTTCTTTTGGAAGCCTGCAAAGTTACTGGCCAGATTAGGAGGTTTATCCATGTGAGCACTGATG AAGTCTACGGTGAGACTGACGAGGATGCTGTTGTGGGAAACCATGAGGCTTCACAGCTTCTTCCGACAAATCCTTATTCTGCAACAAAGGCTGGTGCTGA GATGCTTGTTATGGCCTATGGTAGGTCCTATGGGTTACCTGTGATTACAACTCGCGGGAACAATGTTTATGGCCCTAATCAATTTCCAGAGAAGTTAATT CCCAAGTTTATCCTCTTGGCAATGAGAGGGATGCCTCTGCCCATCCATGGGGATGGAACCAATGTGAGGAGTTATTTGTACTGTGAAGATGTGGCTGAGG CTTTCGAGGTGATCCTCCATAAGGGAGAAGTTGGCCATGTATACAACATCGGAACAAAGAAGGAAAGGAGGGTCAATGATGTTGCCACAGATATATGCAA GCTTTTCTCTATGAATCCCGAGTCTAGCATCAAGTTTGTTGAGAACAGACCCTTTAACGATCAAAGGTACTTCCTAGATGACGAGAAGCTGAAAAAATTG GGCTGGTCTGAGCGAACTATTTGGGAGGATGGCTTGAAGAAGACTATTGAATGGTATACTCAGAATCCTGATTGGTGGGGTGACGTCTCAGGTGCCTTGC TTCCTCACCCAAGAATGCTAATGATGCCTGGTGGGAGACACTTTGATGGTTCTGAAGATGGCAAGTCTGGGTCAGATGCCTCAAACTCTAGCCAAATAGC GGTTCCAGTTAATAAAACTGGAACCACTGCAGCTTTCAACAAACCTGCGCTGAAATTTTTGATCTATGGTAGGACAGGATGGATTGGTGGTCTACTTGGA AAGTTATGTGAGAAGCAAGGGATTCAATTTGAGTATGGAAAGGGCCGCTTAGAAGATCGTTCATCACTTTTGGCCGATATTCTTAATGTTAAGCCTACTC ATGTTTTTAATGCTGCTGGTGTTACTGGAAGACCAAATGTTGATTGGTGTGAATCTCACAAAACAGAAACCATCCGAGCTAATGTGGCTGGGACACTAAC GTTAGCAGATGTTTGCAGAGAGAAGAACCTCCTCATGATGAATTATGCAACAGGATGTATTTTTGAATATGATGCTGCTCACAAGGAAGGTTCTGGCATA GGATTTAAGGAGGAAGATAAACCAAACTTCACTGGTTCTTTCTACTCCAAGACTAAGGCCATGGTTGAGGAGCTGCTGAAAGAGTATGAAAATGTGTGCA CTCTCAGGGTTAGAATGCCGATATCATCAGATTTGGAGAACCCACGCAACTTCATCACGAAGATCTCACGGTACAGCAAAGTTGTTAACATCCCAAACAG CATGACCATTTTGGATGAGCTTCTACCGATTTCAATTGAGATGGCGAAACGGAACCTGAGGGGGATCTGGAACTTCACAAATCCTGGTGCTGTGAGCCAC AATGAGATACTGGAGATGTACAAGAAATACATAGACCCCAAGTTTACGTATGCTAACTTCACCCTGGAGGAGCAAGCCAAAGTGATAGTGGCCGCAAGAA GCAACAACGAGATGGATGCCTCGAAGTTGAAGAAGGAGTTTCCGGAATTGATGCCAATCAAGGAGTCGCTAATCAAGTATGTATTTGAGCCAAACAAGAG AACATAG
AA sequence Show only first row Show all	>Lus10042497 pacid=23153932 polypeptide=Lus10042497 locus=Lus10042497.g ID=Lus10042497.BGIv1.0 annot-version=v1.0 MSSYTPKNILITGAAGFIASHVCNRLIRNYPDYKIVVLDKLDYCSNLKNLLPSKPSPNFKFVKGDIGSADLVNFLLITESIDTIMHFAAQTHVDNSFGNS FEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLI PKFILLAMRGMPLPIHGDGTNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVNDVATDICKLFSMNPESSIKFVENRPFNDQRYFLDDEKLKKL GWSERTIWEDGLKKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEDGKSGSDASNSSQIAVPVNKTGTTAAFNKPALKFLIYGRTGWIGGLLG KLCEKQGIQFEYGKGRLEDRSSLLADILNVKPTHVFNAAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREKNLLMMNYATGCIFEYDAAHKEGSGI GFKEEDKPNFTGSFYSKTKAMVEELLKEYENVCTLRVRMPISSDLENPRNFITKISRYSKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSH NEILEMYKKYIDPKFTYANFTLEEQAKVIVAARSNNEMDASKLKKEFPELMPIKESLIKYVFEPNKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	0	1
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	1.0	0.9703
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	1.4	0.9581
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	2.4	0.9393
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	3.6	0.9161
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	3.7	0.9315
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	3.9	0.9345
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	4.5	0.9371
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	4.9	0.9343
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	6.2	0.9095
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	8.0	0.9132

Compare expression of checked genes

Lus10042497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.