Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78600 265 / 3e-88 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G06040 150 / 1e-44 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT2G31380 142 / 7e-41 CO STH salt tolerance homologue (.1) AT4G39070 134 / 8e-38 CO B-box zinc finger family protein (.1) AT4G10240 130 / 2e-37 CO B-box zinc finger family protein (.1) AT1G75540 134 / 9e-37 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT2G21320 100 / 2e-25 CO B-box zinc finger family protein (.1) AT4G38960 96 / 1e-23 CO B-box type zinc finger family protein (.1.2.3) AT5G15850 80 / 8e-17 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT3G02380 77 / 9e-16 CO ATCOL2, COL2 CONSTANS-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038147 [exp] 560 / 0 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10028791 [exp] 137 / 2e-39 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10017495 [exp] 136 / 9e-39 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10027041 [exp] 135 / 5e-38 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10025579 [exp] 135 / 5e-38 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10031087 [exp] 100 / 2e-25 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 100 / 3e-25 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 96 / 2e-23 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10020105 [exp] 75 / 6e-15 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105400 [exp] 351 / 6e-122 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.001G384000 [exp] 333 / 4e-115 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.017G028300 [exp] 148 / 4e-43 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.017G028301 [exp] 147 / 5e-43 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.007G130100 [exp] 142 / 4e-41 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.004G161000 [exp] 142 / 4e-41 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.002G028200 [exp] 142 / 6e-40 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.005G234500 [exp] 139 / 4e-39 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.009G122000 [exp] 134 / 4e-38 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.005G117100 [exp] 103 / 7e-27 AT2G21320 192 / 4e-63 B-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10042498 pacid=23153919 polypeptide=Lus10042498 locus=Lus10042498.g ID=Lus10042498.BGIv1.0 annot-version=v1.0 ATGAAAATACAGTGCAACGTGTGTGAGGCTGCGGAGGCGAAGGTGCTCTGTTGCGCAGACGAGGCAGCATTGTGTTGGGCTTGCGACGAGAAAGTACACG CCGCCAACAAGCTCGCCAGCAAACACCAGAGGGTTCCCCTTTCCAATTCTTCCCCACAATTGCCCAAATGCGACATTTGCCAGGAGATGGCAGGCCTTTT CTTTTGCCTAGAAGATAGAGCTTTGCTCTGCAGGAAATGTGATGTAGCCATTCACACGGCAAATGAACATGTGTCTGTTCATCAAAGATTTTTGCTTACA GGAGTAAAGGTAGGCCTTGAGCCTACTGATCCTGTTGGCTCCTCTTCCTCTGCCAAGTCGCTCTCTGGTGAAAAGATGTCAGGGACGAAGACTGACTTTG TTTCAGGAAGAGTCTCCTCGATGCCTTTTGCGAGTTCGTCAAATTATGCTCCATCTGTAGATGGAATGAGGAGCTCTGAACCTCTGAAGGTGCCATTTGC AGAGGGTAACAATGCTGGAGCCATCCAACAGTGGCAACTAGATGATTTGTTCAGTCTAACTGGGTTCAACCAGAATTACAGCTACGTGGGTAATGGTTCA TCAAAGGCTGACAGTGGGAAGCGCAGCGAGTCTGAAAACTCAGCGATGATGAGATCCGGGGAGGACGAAATGGATTATGGGGAGTGCTTGGGTCAGGCTT CAGAGAGCTGTTGGGCAGTGCCAGAGATGCCATCACCACCTACTGCATCGGGGCTTTGTTGGCTGAAAAGCTCAAGGGAACACTGTGATGTTGAGGATTT TGTGCCTGATATAAGATGTTCAGGAGCTAAGACTGACCACGATGACGCGAAAGAACACACGAGAGTCCCTAAAAGACCAAGGCAACAACATTGGACTCTC TATTGA
AA sequence Show only first row Show all	>Lus10042498 pacid=23153919 polypeptide=Lus10042498 locus=Lus10042498.g ID=Lus10042498.BGIv1.0 annot-version=v1.0 MKIQCNVCEAAEAKVLCCADEAALCWACDEKVHAANKLASKHQRVPLSNSSPQLPKCDICQEMAGLFFCLEDRALLCRKCDVAIHTANEHVSVHQRFLLT GVKVGLEPTDPVGSSSSAKSLSGEKMSGTKTDFVSGRVSSMPFASSSNYAPSVDGMRSSEPLKVPFAEGNNAGAIQQWQLDDLFSLTGFNQNYSYVGNGS SKADSGKRSESENSAMMRSGEDEMDYGECLGQASESCWAVPEMPSPPTASGLCWLKSSREHCDVEDFVPDIRCSGAKTDHDDAKEHTRVPKRPRQQHWTL Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Lus10042498 [exp]	0	1
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	7.9	0.8178
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	10.1	0.8172
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	17.5	0.8026
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	18.5	0.8082
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10030103 [exp]	21.4	0.8158
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	22.8	0.7911
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	25.9	0.7837
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	27.0	0.7978
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	33.9	0.7999
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Lus10023228 [exp]	34.9	0.7840

Compare expression of checked genes

Lus10042498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.