Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53470 888 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 886 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 867 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 698 / 0 Mechanosensitive ion channel family protein (.1) AT2G17010 479 / 7e-157 Mechanosensitive ion channel family protein (.1) AT5G12080 447 / 4e-145 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 408 / 5e-130 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 45 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038148 [exp] 1572 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 880 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10022654 [exp] 765 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 708 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 701 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 571 / 0 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 565 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10036586 [exp] 458 / 2e-149 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 456 / 2e-148 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384100 [exp] 1071 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 1063 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 845 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 655 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G144100 [exp] 494 / 9e-163 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 489 / 1e-160 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 481 / 3e-158 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 471 / 2e-154 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10042499 pacid=23153802 polypeptide=Lus10042499 locus=Lus10042499.g ID=Lus10042499.BGIv1.0 annot-version=v1.0 ATGTCAGCCGATTCCAGTGACCGCAGGGAGTTACTCCTCAATATGAACCGCACTTCCCCTGCCCGACTAGTCCCCGCCGCCGCTGCACCCCCGGGGAATA TATGGCGAGAATCTAGCTATGATTTCTTTCAAGGCGTCGACAAAGATAGAAAGAGGGAGTCGGAGCACCATGAAGATGGGAACGAAAGCTACCGATTCGA TTTTAATCCCACTCGTGGAAGTGGGAACAATGCCGGGCCAGCTCCGACCGAGGAGGATCCGCCGTCCAAGCTCATCGGTCAGTTTCTACACAAGCAACAG GCGTCCGGTGAATTCTCTTTGGATATGGACTTGGAGATGGCGGAGCTTCAGAACGGCAGCGGCGATTCGTTGCTTCAACGGAATCTCGCTCCGGTTACCG AGTCGCCTGTGTCGCTTCACCAGCGAGTGTCGTTCGAGACGAGTGAATCGTTGATGAGGAAGCAGGCCGCCAGATTCAATGGATCTCCGGGCATCCAGTC CAACACTGGCAGTCCTGCTGCTCTTGATGGAGCAGAGGTTGTCAAGTGCAGTTCTAGAGGTGACGGCTCGTTTTCCAGCAACACATCGTTTAAGAGGAAA TCCAACTTGTTCAAGGAGAGAACCAAATCCAGATTGATGGATCCACCGCATCCTCCGCAGCAACAGCAGCCGACCTCTCAGCCGGAGAAATCTGGACGGA TGCCTGGCAAAAAATCGGGGCAGTTGAAATCTGGATTTGTTGGACGGAGCAGTCACATTGACGAGGAAGAAGATGATCCGTTGCTGGAAGAGGATTTGCC TGAAGGATTGAATAACGATAAGCTCGGTATCTGGACTATTTTAGAATGGGTTAGCTTGATTTTACTTATTGCTGCTTTTGTGTGTAGTCTTACTATTCCA AAACTGAAGAAAAAATACATGTGGAACCTTCCACTGTGGAAATGGGAAGTAATGGTTTTAGTGCTGATTTGCGGGAGGTTAGTCTCAGGATGGGTGATTC GGTTCATTGTGTTCTTCATTGAGAGGAACTTTCTGCTGAGAAAACGGGTTCTCTATTTCGTTTATGGAATTAAGAAGCCTGTTCAGAACTGTCTGTGGTT AGGACTGGTGTTGATAGCTTGGCATTTCCTGTTTGATAAGAAAGTTGAGAAGGAGACTGGAAGTACATCTCTGAGGTATGTGACCAAGGTTCTTCTATGC TTGGTTGTTGGGACATTGTTGTGGCTGGTGAAGACCCTTGTTGTCAAAGTGCTTGCTTCTTCTTTTCATATGAGCACTTACTTTGATCGGATTCAGGAGT CGTTGTTTAACCAATATGTAATCGAGACGCTTTCTGGTCCTCCGTTGGTTGAGATTCAAAAGAATGAAGAGGAGGAGGAAAGACTTGTAGCAGAGATGCA GAAGTTGCATAATGCTGGTATTGAAGTCCCTCCGGCTCTTAAAGCAGTTACTTGTCCATCGCCTCAGCCTAACAGGCTGATTGGCAGTGGTCGGCTTCAG AAAAGTCCTCGAGTTGGTACACCTCGAGCTTCAGGTGCTTTCGCCAACACAGACAAAGAGGGTGAAGATGCAATAACGATTGATCACTTGCATAAACTGA ATCATAAGAATGTTTCTGCTTGGAATATGAAGAGACTGATGAACATAATCAGACATGGGTCTCTGTCGACTCTGGATGAACAAATAAAGGACTCGAGTCA CGATGATGATGAATCAACTACGAAAATCAGAAGTGAATATGAAGCAAAGGCTGCTGCAAGGAAAATATTTCAAAATGTGGCCAAGCCAGGTTCGAGATAT ATTTACTTTGAAGATCTCTTGCGCTTTATGGAAGAAGATGAGGCTACAAAAGCTATGAGTTTTTTTGAAGGAGCAGCAGAAAGCCAGAAGATCAGCAAGT CATGCTTAAAGAACTGGGTGGTAAATGCTTTCAGAGACAGAAGAGCACTTGCTTTGACCCTAAACGATACGAAAACCGCAGTGAATAAGTTGCACCGGGT TGTGAATGTCCTGGTCGCCATCCTGATCATCATCATCTGGCTTCTCATGTTGGGAATAGCCACGACAAAATTCCTGCTCTTCCTAAGCTCCCAACTTGTT CTTGTAGCATTCATTTTCGGGAACACCTGCAAAACCGTATTTGAAGCTATCGTGTTCTTGTTTGTGATGCACCCATTCGATGTAGGCGACCGCTGTGAAA TAGATGGAGTTCAGATGATTGTTGAAGAGATGAACATTCTCACCACCATCTTCCTAAGATTCGATAACCAGAAGATAATTATCCCCAACAGCGTCCTTGC CACCAAATCCATTGGTAACTACTACCGCAGCCCAGACATGGGAGACGGAATCGAGTTCTTCATTCATGTAGCTACTCCAACTGAGAAGATAGCTGCTGTG AGGCAAAGAATCAACGCGTATATCGAGAATAAAAAGGAGCACTGGTACCCGCAACCCTTGATCATACTAAAGGAGGCGGATGCTCTGAACAGAGTGAGGT TGGCGATATGGCCGACACACAGGATGAACCATCAAGACATGGGAGAAAGGTATGTGAGGAGATCACAGTTAATAGAAGAGATGGTTAAGATATTCAAGGA GCTGGACATGCAGTACCGGCTGCTGCCAATGGACATTAACGTACGGGCGTTGCCACCGGCGTCTTTGGAGAGAGTCCCACCTAGCTGGGCAGCTTGA
AA sequence Show only first row Show all	>Lus10042499 pacid=23153802 polypeptide=Lus10042499 locus=Lus10042499.g ID=Lus10042499.BGIv1.0 annot-version=v1.0 MSADSSDRRELLLNMNRTSPARLVPAAAAPPGNIWRESSYDFFQGVDKDRKRESEHHEDGNESYRFDFNPTRGSGNNAGPAPTEEDPPSKLIGQFLHKQQ ASGEFSLDMDLEMAELQNGSGDSLLQRNLAPVTESPVSLHQRVSFETSESLMRKQAARFNGSPGIQSNTGSPAALDGAEVVKCSSRGDGSFSSNTSFKRK SNLFKERTKSRLMDPPHPPQQQQPTSQPEKSGRMPGKKSGQLKSGFVGRSSHIDEEEDDPLLEEDLPEGLNNDKLGIWTILEWVSLILLIAAFVCSLTIP KLKKKYMWNLPLWKWEVMVLVLICGRLVSGWVIRFIVFFIERNFLLRKRVLYFVYGIKKPVQNCLWLGLVLIAWHFLFDKKVEKETGSTSLRYVTKVLLC LVVGTLLWLVKTLVVKVLASSFHMSTYFDRIQESLFNQYVIETLSGPPLVEIQKNEEEEERLVAEMQKLHNAGIEVPPALKAVTCPSPQPNRLIGSGRLQ KSPRVGTPRASGAFANTDKEGEDAITIDHLHKLNHKNVSAWNMKRLMNIIRHGSLSTLDEQIKDSSHDDDESTTKIRSEYEAKAAARKIFQNVAKPGSRY IYFEDLLRFMEEDEATKAMSFFEGAAESQKISKSCLKNWVVNAFRDRRALALTLNDTKTAVNKLHRVVNVLVAILIIIIWLLMLGIATTKFLLFLSSQLV LVAFIFGNTCKTVFEAIVFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRFDNQKIIIPNSVLATKSIGNYYRSPDMGDGIEFFIHVATPTEKIAAV RQRINAYIENKKEHWYPQPLIILKEADALNRVRLAIWPTHRMNHQDMGERYVRRSQLIEEMVKIFKELDMQYRLLPMDINVRALPPASLERVPPSWAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	0	1
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	1.7	0.9082
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	2.4	0.9009
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	5.2	0.8856
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	5.5	0.8791
AT4G20160			unknown protein		Lus10036249 [exp]	5.7	0.8854
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	9.5	0.8579
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	13.0	0.8185
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	14.4	0.8380
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	15.3	0.8252
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	19.7	0.8609

Compare expression of checked genes

Lus10042499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.