Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78620 308 / 1e-105 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038149 [exp] 340 / 2e-119 AT1G78620 349 / 1e-121 Protein of unknown function DUF92, transmembrane (.1.2) Lus10005554 [exp] 338 / 2e-117 AT1G78620 410 / 3e-144 Protein of unknown function DUF92, transmembrane (.1.2) Lus10013691 [exp] 337 / 3e-117 AT1G78620 404 / 7e-142 Protein of unknown function DUF92, transmembrane (.1.2) Lus10017753 [exp] 45 / 2e-05 AT5G19930 402 / 1e-142 Protein of unknown function DUF92, transmembrane (.1.2) Lus10033068 [exp] 42 / 0.0002 AT5G19930 380 / 9e-134 Protein of unknown function DUF92, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105700 [exp] 346 / 1e-120 AT1G78620 392 / 7e-137 Protein of unknown function DUF92, transmembrane (.1.2) Potri.001G384300 [exp] 339 / 3e-118 AT1G78620 416 / 1e-146 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [flax] [poplar] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Lus10042501 pacid=23153742 polypeptide=Lus10042501 locus=Lus10042501.g ID=Lus10042501.BGIv1.0 annot-version=v1.0 ATGCTTCTTCACCCTCCCAATGCAGTATCGATGCAAGGCGTCGTATCAGACGCCATCGGCTTGCTCCAATCTCCTCATCCCACTTGGCAATCCTCCCTCT TCAACAATTTCTTGATTTTCATCCTCGGCTCCCCGATTCTGGTTTCTGGCCTTTCCTTTTCCGGCATCTCAGCCGCCTTCTTGCTTGGAACCCTCGTTTG GCGCGCTTTCGGTCCATCTGGATTCCTCCTCGTTGCCTCTTACTTCATCATAGGAACTGGTGTTACCAAAGTGAAAATGTCGCAGAAGGAAGCTCAGGGG ATTGCTGAGAAGAGGAGAGGAAGAAGAGGGCCCGGCAGTGTAATTGGTTCAAGTGCTGCTGCTTGTGTTTGTGCTTTCTTGTCGATATATGGAGTTGGCG GTGAAGAATTTGCTCCGCTTTGGCAGCTTGGATTCGTTGCCAGTTTCTGTACCAAGTTGAACGATACTGTCTCCAGTGAGATCGGGAAGGCTTATGGCAA AACTACGTACCTAGTCACGACATTTAACGTTGTTCCTAGGGGAACAGAAGGGGCTGTGAGCGTTGAGGGAACTTTAGCTGGATTCGTAGCGTCGGTCGTG CTTGCTGTGGTTGGTTGTCTCATGGGCCAGGGAGAAGATGCCGATAAAAGGAATGCTGTATTGTTCTCCTAG
AA sequence Show only first row Show all	>Lus10042501 pacid=23153742 polypeptide=Lus10042501 locus=Lus10042501.g ID=Lus10042501.BGIv1.0 annot-version=v1.0 MLLHPPNAVSMQGVVSDAIGLLQSPHPTWQSSLFNNFLIFILGSPILVSGLSFSGISAAFLLGTLVWRAFGPSGFLLVASYFIIGTGVTKVKMSQKEAQG IAEKRRGRRGPGSVIGSSAAACVCAFLSIYGVGGEEFAPLWQLGFVASFCTKLNDTVSSEIGKAYGKTTYLVTTFNVVPRGTEGAVSVEGTLAGFVASVV LAVVGCLMGQGEDADKRNAVLFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78620			Protein of unknown function DU...		Lus10042501 [exp]	0	1
AT1G69523			S-adenosyl-L-methionine-depend...		Lus10037162 [exp]	28.8	0.8229
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	38.0	0.8164
AT1G07040			unknown protein		Lus10013272 [exp]	40.1	0.8147
AT1G07040			unknown protein		Lus10030795 [exp]	74.1	0.7904
AT3G50860			Clathrin adaptor complex small...		Lus10024011 [exp]	76.7	0.7441
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	111.7	0.7733
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10034528 [exp]	155.8	0.7569
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	166.0	0.7602
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031753 [exp]	195.0	0.7604
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10000334 [exp]	198.3	0.7599

Compare expression of checked genes

Lus10042501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.