Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44820 605 / 0 Peptidase M20/M25/M40 family protein (.1) AT1G44180 593 / 0 Peptidase M20/M25/M40 family protein (.1) AT4G38220 465 / 1e-162 AQI aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038151 [exp] 808 / 0 AT1G44820 622 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10026565 [exp] 488 / 2e-171 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10013848 [exp] 461 / 8e-160 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085400 [exp] 656 / 0 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.002G085500 [exp] 652 / 0 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.009G169300 [exp] 494 / 8e-174 AT4G38220 646 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.004G208100 [exp] 474 / 4e-166 AT4G38220 635 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10042502 pacid=23153663 polypeptide=Lus10042502 locus=Lus10042502.g ID=Lus10042502.BGIv1.0 annot-version=v1.0 ATGACGATGATCTCTCAACTTCTCTTATTCGCTTTCCTCATCTCATCTTCCACCGCCACCATCCTCCACCACGAAAGCACTCCGGTGACCCGTTTTCAGC AGTACCTAAGATTCAAAACTGCTCATCCCAACCCAAACTACACAGCTCCCGTCTCCTTCCTCACTTCAATTGCCCACTCCCTCAATCTCAAAACCCAAAC TCACGAGTTCGTCGCGGATAAGCCCGTCCTTGTTGTAACCTGGACCGGCTCCAACCCGTCTCTCCCATCCATACTTCTGAACTCTCACCTCGATTCCGTC CCTGCAGAGCCTTCCAAGTGGACCCACCCGCCTTTCTCCGCCGTCCGCGACCAGGGCGGGAGGATCTTCGCCCGCGGAGCTCAGGACGACAAGTGCATAG CCATCCAGTACTTGGAAGCCATCCGTAACTTGATTCGTGACGAGTTTGTGCCTGCCCGTACTGTTCACATCTCCTATGTCCCCGACGAGGAGATTGGTGG CCAAGATGGAGCGGAGAAGTTTGTTGCATCCAAGGTGTTCGATGAATTGCGAGTTGGGTTTATGTTGGATGAAGGGCAGGCTTCGGTGAACGATGAGTTC AGGGTTTTTTATGGGGATAGGTGTCCGTGGAAGGTGATTATCAAGGCTAGTGGACAGCCCGGTCATGGGTCCAGATTGTATGATAATGGGGCGATGGAGA ATCTGATGAAGAGCGTGGAGGTTATTAGTAGGTTCCGTGAGGGTCAGTTTGATGCTGTTAAGGCTGGGAAAGCTGCCCACTCTGAGGTTATCTCAGTTAA TCCTGTTTATTTGAAAGCTGGGATTCCTTCCCCGACTGGATTTGTAATGAATATGCAACCTTCGGAGGCAGAAGCAGGGTATGATATTAGGATGCCTCCG GCTGCAGACCCTGATCTTATGAAGGAAAGAATTGCTCAAGAGTGGGCTCCAGCAGTTCGCAACTTGACATTTAAGATACAGGCGCAAGGACCTATAAGGG ATCTAAATGGGAACCCATTAGTGACAGCAACTGATGATTCTAATCCATGGTGGTCTGCATTTAAGGAAGCCATCACTGCAGTTGGAGGAAAGCTGGCGAA ACCTGAAATACTGGGTTCAACTACTGATGCTAGGTATGTGAGGCAGTTGGGAATTCCTGCATTGGGTTTCTCGCCAATGACAAATACTCCCATATTGCTC CACGACCATAACGAGTTTCTGAAAGATAGCGTGTTCTTGAAGGGTATTGAGGTGTACGAGCACTTAATTAGGTCTCTGAGCTCTTTCGAGACGATCAATG AGTACTAG
AA sequence Show only first row Show all	>Lus10042502 pacid=23153663 polypeptide=Lus10042502 locus=Lus10042502.g ID=Lus10042502.BGIv1.0 annot-version=v1.0 MTMISQLLLFAFLISSSTATILHHESTPVTRFQQYLRFKTAHPNPNYTAPVSFLTSIAHSLNLKTQTHEFVADKPVLVVTWTGSNPSLPSILLNSHLDSV PAEPSKWTHPPFSAVRDQGGRIFARGAQDDKCIAIQYLEAIRNLIRDEFVPARTVHISYVPDEEIGGQDGAEKFVASKVFDELRVGFMLDEGQASVNDEF RVFYGDRCPWKVIIKASGQPGHGSRLYDNGAMENLMKSVEVISRFREGQFDAVKAGKAAHSEVISVNPVYLKAGIPSPTGFVMNMQPSEAEAGYDIRMPP AADPDLMKERIAQEWAPAVRNLTFKIQAQGPIRDLNGNPLVTATDDSNPWWSAFKEAITAVGGKLAKPEILGSTTDARYVRQLGIPALGFSPMTNTPILL HDHNEFLKDSVFLKGIEVYEHLIRSLSSFETINEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44820			Peptidase M20/M25/M40 family p...		Lus10042502 [exp]	0	1
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	8.8	0.7462
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	16.3	0.7311
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	21.8	0.7291
AT1G71080			RNA polymerase II transcriptio...		Lus10032448 [exp]	26.3	0.6695
AT1G53050			Protein kinase superfamily pro...		Lus10000584 [exp]	33.9	0.7001
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	40.5	0.7221
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	42.4	0.7123
AT5G06130			chaperone protein dnaJ-related...		Lus10016993 [exp]	50.9	0.6975
AT3G27030			unknown protein		Lus10041550 [exp]	58.6	0.6924
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	66.4	0.6957

Compare expression of checked genes

Lus10042502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.