Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08390 156 / 6e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038152 [exp] 276 / 2e-97 AT1G08390 155 / 7e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190200 [exp] 188 / 6e-63 AT1G08390 158 / 9e-51 unknown protein Potri.002G256001 [exp] 80 / 6e-20 AT1G08390 0 / 1 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042503 pacid=23153812 polypeptide=Lus10042503 locus=Lus10042503.g ID=Lus10042503.BGIv1.0 annot-version=v1.0 ATGGATTACAGTCTCGCGGCACTGAAGCTTCTCAACTTCCAACTGAAAGACGCTCGCGAGAGTTCTAAACCCAAACTCCCCACTCTAGGTGCCATCCTCT TCCAGCGCGCCTGGTTACAGGGATTCATAGTCTCCAACTGCGGTGACAACCGCCTGCTTCTTGACGACGGCACCGGCGTCATCCAGCTTCTCGTCACCGG CGATTTCAGGCGCCGCAAGTGGGATGTTGGGCTTTATGTAATGGTAATAGGAGCCTATGCTCTCCCTACGGAGACGAATCCTCCCTTTATCAAGGTTCAT AAGATGGTGGATCTCTCACCATTTCCGAACAGAGAAGCCATGTGGTTTCTGGAAGTGTTGGAGGCGTATAAGCTATTCTACCAGCCACTCATTGAAGACT GCATGTGA
AA sequence Show only first row Show all	>Lus10042503 pacid=23153812 polypeptide=Lus10042503 locus=Lus10042503.g ID=Lus10042503.BGIv1.0 annot-version=v1.0 MDYSLAALKLLNFQLKDARESSKPKLPTLGAILFQRAWLQGFIVSNCGDNRLLLDDGTGVIQLLVTGDFRRRKWDVGLYVMVIGAYALPTETNPPFIKVH KMVDLSPFPNREAMWFLEVLEAYKLFYQPLIEDCM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08390			unknown protein		Lus10042503 [exp]	0	1
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10009886 [exp]	14.2	0.7927
					Lus10012138 [exp]	16.6	0.7099
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	19.7	0.7748
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002013 [exp]	24.2	0.7271
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10014839 [exp]	26.6	0.7791
AT3G30775		PDH1, PRODH, PR...	proline dehydrogenase 1, EARLY...		Lus10005114 [exp]	32.2	0.7596
AT3G23325			Splicing factor 3B subunit 5/R...		Lus10011813 [exp]	36.7	0.7486
					Lus10037345 [exp]	38.3	0.7310
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	39.2	0.7404
AT5G02510			unknown protein		Lus10025332 [exp]	41.8	0.7369

Compare expression of checked genes

Lus10042503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.