Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 995 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 952 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 768 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 751 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 716 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 663 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 649 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29740 642 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 628 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 614 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038153 [exp] 1450 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 1128 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 1013 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 746 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 716 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 591 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 576 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 504 / 8e-164 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 277 / 2e-83 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106400 [exp] 1069 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 1066 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 1061 / 0 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 1058 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 1054 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 1046 / 0 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025800 [exp] 842 / 0 AT1G53440 1010 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 839 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385200 [exp] 834 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072741 [exp] 737 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10042505 pacid=23153898 polypeptide=Lus10042505 locus=Lus10042505.g ID=Lus10042505.BGIv1.0 annot-version=v1.0 ATGCTGACCCTTAAGCAAAGATCTCTTGAAGCATTGACTGATATGTGTGGTCAGGAAGAAGCCAAGAAAGAAGGCACTATAGTCCTCACCTATTGGGTCA TGATAAAAGAAGTAGAAGCAAGGGAGAAGTTTCATACCTCAGACCCCAGTCACAGTCACAGTAGTCAGTCACATCCTTGCGGCATTATTGGTAAGTTGAT ATATAAAACTTCTGAGCAGCAGCAGCTCATCATCATCTGGGCTCTGGTCTCTGTCTTCTTCTTCTCCCACTTGCATTCCAGATTTCCAGTTAAAACACTA ATGGCCATATCTAGCAAGCTTCATGCTACGGAATGGAATGTGAGCAGAAGTTCCTGTGGCAGCCCAGCATGGAATCTCACCATCATGCCCTACAAAACTC AAAGCATTATTACGTGCAACTGTTCTTTTGGTGGTGGCACCATTTGTCATGTCATCAAAATGTATGAACCATTCATCTTTAACTCATTCCGCTACGTACC TAGCCCTTTCACTCCTCGCATGACAACTGAAATAAATAAATACTGCAAATGGCTTTTCGCGGCATGCAGTTCGGTGAAGGGTTTCAATTTAACAGGTATT CTACCACCTGAACTCGGCAACCTTACTCAGCTAACCGAGCTGGATCTTACCCGCAACTTCATCAGTGGCCCCATCCCTCCAAGTCTTGCCCAACTTACTA AACTAGCGAAATTGTCTGTTCTGGGAAACCGACTAAGTGGGGCTATCCCCCTAGAGATTGGCCACATTACTACTCTTCAAGAACTGGTGTTGGAGGATAA CTTATTACAAGGATCTCTTCCGCCAAGCCTGGGAAACCTTCAAAGCTTGGAAAGACTCATTCTTTCCGCAAACAATTTTACGGGTTCTATACCACATAGC TTTGCCAATTTAAGGAACATTACTAGCTTTCGGATAGATGGGAGCACTTTGGCTGGAAAGCTGCCTGAATTTATAGGAAATTGGACCAATCTTAAAGAAC TATATTTGCAGGGCACATTGATGCAGGGTCCTATTCCTTCTACCATATCCATGCTGTACAACTTGAAGGAGCTGTTAATATCGGACTTAAGCGGTCCAAT TTCTACTTTCCCTAATCTTAAGGACCTGACAAAGCTCAGGACATTGGTGCTGAGGAACTGCTTGCTTACTGGTTCAGTTCCAGATTATATTGGAAACAAA ACAGTATTAAAAACTTTGAAAGTCAGGGATTTGAGTTTCAACAGTTTGACAGGTTTGATACCAGACATTGACAATTTACCTAAACTGCAATACACGTTTC TAAATAACAATTCATTAACTGGGCAAGTACCGCCATGGATATTCAGTAGCCCGAACAATTTTGACTTATCATACAACAATTTTACTGGGACTGCTCTGCA AGATTGTAGGAACCCAAGCAAAGTGAACCTGATTTCTAGTTATTCACCTGCTAACAACAAAGTCAGTTGGTGCTTGAAGAAGGGCATGCCTTGCGTTGGG AATAAGCTTCAGAACAGATCCTTGTATATTAATTGTGGAGGGGACGACACAGAGTTTGAAAATAAAAAATATGAGGCGGATCTTAGAGACCTGGGCGACG GGGCATCAGCCTTTTTTTCAGTAGGAGGAAAATGGGGTTATAGTAGTACTGGACACCACTTCGACCGTGAGGGTCTTAATTTCTTCCCACGCACCACTCA TGTGATCAGTGAAAGTATCTATGTAACTGCACGCATAGCTCCTCAATCTCTCAAGTACTATGGCTTTTGCATGCTGAAAGGAAGTTACAATGTCACTCTC CATTTTGCTGAGATCCAGTTCTCCAATGATCAGACTTATACTAGTCTTGGACGTCGCATATTCGATATATCAATTCAAGGAAAGATTGTCCGTCGGGACT TTGACATCGTAAAAAAAGCTGGAGGCGTTTCCATTGGAACCACGGAGGTATTTGACAATATAACTGTCCATGGTGACACTTTGGAGATACATTTGTACTG GTCTGGGAAAGGAACTACATCTATTCCCGAGAAAGGTGTCTATGGACCTCTCATTTCCGGAATCACCGTGATTCCAAACTTCAAGGTTCCTGAAGGAAGA AGTAAATCAATAGGGGTCACTCCAGGAAGTAGTGGATTATCGGGAGGTGTCATTGCTGGCATCATTGTTTCCTCGTTTGTGGTTCTTCTGATTATTTGTT TATTCATCATCTTCGTCATTAGAAGAAGAAAAGAGGACGGGAATTCGGAACTTCGTGGACTTGATCTTCAGACTGGTTGTTTCACACTAAGACAGATCAA ACTTGCTACTAATAACTTCAATTCTGCAAATAAGATTGGAGAAGGAGGGTTTGGCCCAGTCTATAAGGGTATCCTCTCAGATGGTGGATTAATTGCAGTG AAGCAACTGTCAGCCAAATCAATGCAGGGGAATCGCGAATTTGTGAATGAAATAGGAATGATTTCTGCACTACAACATCCCAATCTTGTCAAGCTTTTCG GATGCTGCATTGAAGGAAATCAGCTTTTGCTAGTATATGAATACTTGGAAAACAACAGTCTGGCTCGTGCACTATTTGGTACCGAGGAACAAATGCTGCA GCTTGACTGGAAGACAAGGAAATCCATATTGTTGGGAGTTGCAAAGGGATTGACTTACCTTCACGAAGAATCGAGGTTGAAAATCCTGCATGAGGAAGAG GACACCCACATTAGTACAAGAATTGCTGGAACAAGGGGATATATGGCTCCTGAGTATGCAACCAGGGGTTACTTGACAGACAAAGCAGATGTGTATAGCT TTGGTATCGTAATTCTGGAAACCGTGAGTGGAAGGAGCAATACAAGTTACAGGCTAAAAGGAGAAAATGTCTACCTTATTGATTGGGCTTATATGCTGCA AGAGCAAGGAGACCTTCTCGAGCTGGTTGATCCAACACTGAGCTCAGGCTCCTACTTGAAAAAAGAAGTCGAGAAGATGCTCAACTTATCTCTGCTGTGC GCTAACCCATCTCACACTTTGAGGCCGTTGATGTCTTCTGTTGTGGAAATGATAGAAGGCAAAGCTACTGTCCAAGCTCCCATCATCCCACCAGGAGGAA GTGAGTTTGCCAGCCAACAAAGTGCGAGTTTCAGGGCGCTCCAGAAAAAGACACTGCAAGATAGCTATAACACCAACGTCTCATGGGAGAGTAGCGATCA AGTTCAGCAAAGCATTTCCACGGATGATGTACCGTTGGATTCATCATCTTCCATCATAAGCAAGGTTGACCATGCTAATGGTGATGATGACGACGATGAC CATGATGATATCGTTCCACTTTCCTCTTCCGGCAGGCATTTGTAA
AA sequence Show only first row Show all	>Lus10042505 pacid=23153898 polypeptide=Lus10042505 locus=Lus10042505.g ID=Lus10042505.BGIv1.0 annot-version=v1.0 MLTLKQRSLEALTDMCGQEEAKKEGTIVLTYWVMIKEVEAREKFHTSDPSHSHSSQSHPCGIIGKLIYKTSEQQQLIIIWALVSVFFFSHLHSRFPVKTL MAISSKLHATEWNVSRSSCGSPAWNLTIMPYKTQSIITCNCSFGGGTICHVIKMYEPFIFNSFRYVPSPFTPRMTTEINKYCKWLFAACSSVKGFNLTGI LPPELGNLTQLTELDLTRNFISGPIPPSLAQLTKLAKLSVLGNRLSGAIPLEIGHITTLQELVLEDNLLQGSLPPSLGNLQSLERLILSANNFTGSIPHS FANLRNITSFRIDGSTLAGKLPEFIGNWTNLKELYLQGTLMQGPIPSTISMLYNLKELLISDLSGPISTFPNLKDLTKLRTLVLRNCLLTGSVPDYIGNK TVLKTLKVRDLSFNSLTGLIPDIDNLPKLQYTFLNNNSLTGQVPPWIFSSPNNFDLSYNNFTGTALQDCRNPSKVNLISSYSPANNKVSWCLKKGMPCVG NKLQNRSLYINCGGDDTEFENKKYEADLRDLGDGASAFFSVGGKWGYSSTGHHFDREGLNFFPRTTHVISESIYVTARIAPQSLKYYGFCMLKGSYNVTL HFAEIQFSNDQTYTSLGRRIFDISIQGKIVRRDFDIVKKAGGVSIGTTEVFDNITVHGDTLEIHLYWSGKGTTSIPEKGVYGPLISGITVIPNFKVPEGR SKSIGVTPGSSGLSGGVIAGIIVSSFVVLLIICLFIIFVIRRRKEDGNSELRGLDLQTGCFTLRQIKLATNNFNSANKIGEGGFGPVYKGILSDGGLIAV KQLSAKSMQGNREFVNEIGMISALQHPNLVKLFGCCIEGNQLLLVYEYLENNSLARALFGTEEQMLQLDWKTRKSILLGVAKGLTYLHEESRLKILHEEE DTHISTRIAGTRGYMAPEYATRGYLTDKADVYSFGIVILETVSGRSNTSYRLKGENVYLIDWAYMLQEQGDLLELVDPTLSSGSYLKKEVEKMLNLSLLC ANPSHTLRPLMSSVVEMIEGKATVQAPIIPPGGSEFASQQSASFRALQKKTLQDSYNTNVSWESSDQVQQSISTDDVPLDSSSSIISKVDHANGDDDDDD HDDIVPLSSSGRHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	0	1
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	1.4	0.9074
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	1.4	0.9039
AT5G36930			Disease resistance protein (TI...		Lus10041606 [exp]	3.5	0.8688
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	7.3	0.8768
					Lus10030151 [exp]	8.4	0.8669
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015888 [exp]	9.0	0.8390
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	9.8	0.8546
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	10.6	0.8237
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	10.7	0.8656
					Lus10035963 [exp]	12.4	0.7889

Compare expression of checked genes

Lus10042505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.