Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16295 112 / 4e-32 SPH1 S-protein homologue 1 (.1) AT4G29035 106 / 9e-30 Plant self-incompatibility protein S1 family (.1) AT3G55252 58 / 7e-11 Plant self-incompatibility protein S1 family (.1) AT5G04350 57 / 1e-10 Plant self-incompatibility protein S1 family (.1) AT4G16195 56 / 3e-10 Plant self-incompatibility protein S1 family (.1) AT3G17080 55 / 4e-10 Plant self-incompatibility protein S1 family (.1) AT3G26880 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT2G06090 53 / 4e-09 Plant self-incompatibility protein S1 family (.1) AT5G04047 50 / 5e-08 Plant self-incompatibility protein S1 family (.1) AT5G04347 49 / 5e-08 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038154 [exp] 180 / 5e-59 ND 81 / 4e-20 Lus10011892 [exp] 94 / 8e-25 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10022826 [exp] 93 / 2e-24 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1) Lus10022824 [exp] 86 / 1e-21 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1) Lus10011897 [exp] 81 / 9e-20 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10039546 [exp] 76 / 2e-17 AT4G16295 56 / 3e-10 S-protein homologue 1 (.1) Lus10019779 [exp] 74 / 7e-17 AT4G16295 58 / 6e-11 S-protein homologue 1 (.1) Lus10011895 [exp] 74 / 1e-16 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10000683 [exp] 72 / 4e-16 AT4G16295 57 / 5e-11 S-protein homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252500 [exp] 151 / 3e-47 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.016G066900 [exp] 94 / 8e-25 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 74 / 6e-17 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.004G199801 [exp] 71 / 1e-15 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.010G008300 [exp] 61 / 3e-12 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 46 / 1e-06 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 45 / 1e-06 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 45 / 2e-06 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 42 / 4e-05 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.018G148700 [exp] 42 / 6e-05 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10042506 pacid=23153546 polypeptide=Lus10042506 locus=Lus10042506.g ID=Lus10042506.BGIv1.0 annot-version=v1.0 ATGAGCAGTCCATTCGGATCCCGCATTTGCATGGCTATTCCAACGATAGTCCTCCTGGCACTAGCCACCGCCTTGAGCCACCCTTGTCCATCGGAGGCGT CCGCCGTGACGAGCAGGCGGCGGCATCTTCCGGAACTGAGGCGGTGGCACGTGTCAGTGGTCAACGAGTTAAGCGGCGGGAAGGTTCTGTTCCTGCACTG CCAATCCAAAGACGACGACCTGGGGTTGAAGAATCTGTCGGCTGGGTCCAACTCCACGTGGGGTTTCCGAGAGAACTTGTTTGAAAAGACGATGTTCTGG TGCTACGCACGTGATCAAACGACGTCGCGGCGGGAAGCGGCGTTTAAGGTGTTCTGGCACGACGTGTTGTTGTTCTACAAGTGCGGGTGGAGCAAGTGCA TTTGGATTGTGAAGGACGACGGTGTTTATATTCGGGATTTGGATCAGACGGGTAACGTCGACGAACTCCGTTACACTTGGGGAAATCCTCTCAAACGTTT GAAGCAGTAA
AA sequence Show only first row Show all	>Lus10042506 pacid=23153546 polypeptide=Lus10042506 locus=Lus10042506.g ID=Lus10042506.BGIv1.0 annot-version=v1.0 MSSPFGSRICMAIPTIVLLALATALSHPCPSEASAVTSRRRHLPELRRWHVSVVNELSGGKVLFLHCQSKDDDLGLKNLSAGSNSTWGFRENLFEKTMFW CYARDQTTSRREAAFKVFWHDVLLFYKCGWSKCIWIVKDDGVYIRDLDQTGNVDELRYTWGNPLKRLKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	0	1
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	1.0	0.9956
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	4.9	0.9915
AT1G54215			proline-rich family protein (....		Lus10037669 [exp]	6.0	0.9911
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10026295 [exp]	11.5	0.9952
AT4G32295			unknown protein		Lus10002918 [exp]	14.1	0.9687
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10036953 [exp]	15.2	0.9841
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018147 [exp]	15.4	0.9514
AT5G65005			Polynucleotidyl transferase, r...		Lus10041342 [exp]	18.4	0.9568
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	19.1	0.9906
					Lus10009719 [exp]	20.5	0.9901

Compare expression of checked genes

Lus10042506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.