Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 1116 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1) AT3G03370 45 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017637 [exp] 1345 / 0 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10009122 [exp] 1015 / 0 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10028521 [exp] 981 / 0 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 693 / 0 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 274 / 4e-85 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 194 / 9e-56 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128300 [exp] 1196 / 0 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 1047 / 0 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088600 [exp] 629 / 0 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042507 pacid=23153756 polypeptide=Lus10042507 locus=Lus10042507.g ID=Lus10042507.BGIv1.0 annot-version=v1.0 ATGAAGGAACCAGTAGCGGCGCCAACGACGGATTGTGCAGTGAACAGTAATGGGGAGGCGGAGGAGTGGATAGAGGTGATCAACAGGGTGGCAGCAGCTG TTGTGGTGATCAAAACCACCGCCTGCCGAGCGTTCGACACCGAGCTTTGGGGATCGGACTCCGCCACTGGTTTTGTTGTTGACAAGCAGCGGGGTATTAT CCTCACCAATCGGCACGTCGTCCAGCCTGGCCCTGTGGTTGCACAAGCTACATTTCTAAACCAAGAAGATATTACTATATATCCTCTTTACATCGATCCG GTGCATGATTTTGGGTTCTTCAGGTATGATCCTGGTGCGATACAATTCTTGAACTATGAGGCAATCCCTCTAGCCCCAGAGGCTGCCTGTGTTGGCCTTG AAATCAGAGTACTTGGCAATGACAGCGGTGAGAAGCTTTCTATAATGGCTGGTACGATTGCTCGTTTGGATCGAGATGCTCCTTGTTACACAGACGATGG CTACAATGACTTCAATACCGTCTATATCCAAGCGGCATCAGGAACGAAGGGTGGTTCGAGTGGTTCCCCAGTAATTGAGAAACATGGTAGAGCAGTTGCC TTAAATGCTGGAGGTGGTGTTATGAGTTCCAATGCTTTCTTCTTACCTTTAGAACGGGTTATTAGAGCACTAAAACTACTGCAGGAAGGCAACAACGTCT ACAAAAATATATGGAATGCAGTTTGCATTCCTCGAGGAACTTTACAGACAACCTTCTACTATAAAGGATTCAATGAAGTTCGTCGGCTTGGTGTGAAGAA AGACATAGAACAGATGGTACGCAACGTATCTCCGGACGAGACGGGAATGCTTGTTGTTGAATCTGTGGTGCCAGATGGTCCAGCTTATGAACATTTGGAG GCGGGAGACGTGCTTATTCGCCTGAATGGGGAGATAACTACAAAACTTTTAACTTTAGAGTCCATTCTTGATGATCATGTGGACCAAAAGGTTGAATTGC AAATTGAAAGAGGCGGCAAGACTTTAACCGTACACATCAGGGTTCAAAATTTACACTCGGTTACCCCGGACTACTTTTTGGAAGTGAGCGGTGCCATTAT ACACTCTTTGTCTTATCAGCAGGCTCGAAATTTCCGCTTGCCCTGTGGCCTTGTCTATGTTGCACATCCAGGATATATTCTAGAGAGAGCTGGAGTTCCT CGTACAGCCATCATAAAGAAACTTGCAAACATTGAGACGCCAACTATGAAGGAATTGATACCAATTTTTGCCAAGCTCGCCAAAGGTTCTCGAGTGCCTT TAGAATACGTGAATCCCAACGATCGTCATCGACTCAAGCAAGCAGTGGTGACAATTGAGAAGCATGAATGGCATGGAAGCCCAAAGATATACACTCGTGA TGATTGCTCAGGTCTTTGGAAGATACTTCCTGCTTTCCAAACTACTGACACTACAACTTGTCAATCAAAAAATTCGACAGTGCTGAGCGACGAGCCTTCT TCTTCACCGATTGTAGCTTTAACTGAAAAGAGAGCTTCAAACGGTATACACACTACAAAGAATGTTGATTTAGGTCACAATAATGTCAATTCGTTTCCGG CCAGGACTTTGATTGAACCAACATTGGTGATGGTTGAGGTGAGCATACCGTCTCCATGTATGATTGATGGGGTTGATTCGAAATACTTTTACGGGTCGGG TGTCATCGTACACCATTCCGCAAACTTGGGATTGATTGTAGTAGACAGAAACACTGTTTCAATAACGGCTTGTGATATCTTTCTCCATTTTGCTACATGT CCTATTCAAATTCCAGGACAGGTGGTTTTTCTACATCCTGTGTACAATTACGCTATTGTTGCATACAATCCATCTGCCCTAGGAACGGATGGTGCATCCA TGGTTCGTGCTGCACAATTACTCCCAGCACCGTTACTGCGCCACGGAGATCCAGTGTGTCTCGTTGGATTAACTGATAATTTAGTTGCCATTGGAAAAAG GGCTATCGTGACAAATCCATTTCAGTCATTATTTCTCCAATCAGCCCAGTTTCTGCACTATAAAGCGATTAATATGGAAGTGATTGAGATCGATTCAGAT CTTGGAATTACGGCGGGAGTTTTATGCAACGAATTGGGGATGGTTCATGCTGTATGGGGAAGCTTTTACACACAGGTTGAACCTGGGAACATGCTGAGGA ACCAAGTTTACAGAGGAATTCCGATTTATATGGTTAGCCAAGTAGTGGAACAAATTGTACATGGCTCCATTAACAGTGGGTCTGGGCCAGCCCTTGTGAT AAATGGTATCAGAAGATCAATGCCACTTGTTCGACTTCTGGAAGTTGAATTCTTCCCAAGGTCACTTGCTAAAGCCCGCAGCTTTGGCCTCGGTCATTAT TGGATCAATACCCTCTTTAAGAAAGATCCCATGAGAAAGCAGATTTTACGAGTCAAAGGGTGTTATGCCGGGTCGAAAGCTGCAAGTCAATTGACTGAAG GTGACATGTTGTTGGCAATCAATGGGGAGCCGGTTACAAGTTTTCTCGACGTTGAAAATGCTTGTAAAGCATTGGATGATGATCATCTTGGCCATGAAAA CTCCGATGGGATGCTTCACTTGACCATTTTCCGACAGGGAAGTGAGATTAACGTTGATGTCGAAACTGAAATCAAAGACGGAAACGGGACTAGACGTATG ATTAATTGGAGTGGGTGTATCATCCAGGAAACATTCTCTGCTGTTCGTGCTCGTGGATATTTACCCCCAAATGGTCATGGTGTTTATGTTGTTACGATCT TCACAGGAAGCCCTGCGGAAAGATATACTGTACGTACTGATCAGTGGATTGTTGAAGTGAATGGAAACCCAACACCTAACCTTGATGTCTTCTTAAATGT GGTCAAGGAACTGGAGCAACACGAGTTTGTTCGAATGAAGACGGTTAGTTTGGATGGAAAGCCTCAAGTTTTAACGCTAAAACAGGATTTGCTGTATTGG CCAACAGAAGAACTGAATTATGATTCCGACACCGAGACCTGGCGAAGGCACACTATCAAGGCATTCACTTAA
AA sequence Show only first row Show all	>Lus10042507 pacid=23153756 polypeptide=Lus10042507 locus=Lus10042507.g ID=Lus10042507.BGIv1.0 annot-version=v1.0 MKEPVAAPTTDCAVNSNGEAEEWIEVINRVAAAVVVIKTTACRAFDTELWGSDSATGFVVDKQRGIILTNRHVVQPGPVVAQATFLNQEDITIYPLYIDP VHDFGFFRYDPGAIQFLNYEAIPLAPEAACVGLEIRVLGNDSGEKLSIMAGTIARLDRDAPCYTDDGYNDFNTVYIQAASGTKGGSSGSPVIEKHGRAVA LNAGGGVMSSNAFFLPLERVIRALKLLQEGNNVYKNIWNAVCIPRGTLQTTFYYKGFNEVRRLGVKKDIEQMVRNVSPDETGMLVVESVVPDGPAYEHLE AGDVLIRLNGEITTKLLTLESILDDHVDQKVELQIERGGKTLTVHIRVQNLHSVTPDYFLEVSGAIIHSLSYQQARNFRLPCGLVYVAHPGYILERAGVP RTAIIKKLANIETPTMKELIPIFAKLAKGSRVPLEYVNPNDRHRLKQAVVTIEKHEWHGSPKIYTRDDCSGLWKILPAFQTTDTTTCQSKNSTVLSDEPS SSPIVALTEKRASNGIHTTKNVDLGHNNVNSFPARTLIEPTLVMVEVSIPSPCMIDGVDSKYFYGSGVIVHHSANLGLIVVDRNTVSITACDIFLHFATC PIQIPGQVVFLHPVYNYAIVAYNPSALGTDGASMVRAAQLLPAPLLRHGDPVCLVGLTDNLVAIGKRAIVTNPFQSLFLQSAQFLHYKAINMEVIEIDSD LGITAGVLCNELGMVHAVWGSFYTQVEPGNMLRNQVYRGIPIYMVSQVVEQIVHGSINSGSGPALVINGIRRSMPLVRLLEVEFFPRSLAKARSFGLGHY WINTLFKKDPMRKQILRVKGCYAGSKAASQLTEGDMLLAINGEPVTSFLDVENACKALDDDHLGHENSDGMLHLTIFRQGSEINVDVETEIKDGNGTRRM INWSGCIIQETFSAVRARGYLPPNGHGVYVVTIFTGSPAERYTVRTDQWIVEVNGNPTPNLDVFLNVVKELEQHEFVRMKTVSLDGKPQVLTLKQDLLYW PTEELNYDSDTETWRRHTIKAFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	2.0	0.7067
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	3.9	0.6826
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	7.7	0.6695
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	9.5	0.6581
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	10.2	0.6922
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	13.3	0.6217
AT1G15780			unknown protein		Lus10025452 [exp]	15.5	0.6653
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	19.2	0.6478
AT2G33490			hydroxyproline-rich glycoprote...		Lus10002580 [exp]	20.9	0.6011
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	25.4	0.6051

Compare expression of checked genes

Lus10042507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.