Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13710 334 / 9e-115 Pectin lyase-like superfamily protein (.1.2) AT3G24670 327 / 5e-112 Pectin lyase-like superfamily protein (.1) AT4G13210 322 / 1e-110 Pectin lyase-like superfamily protein (.1.2) AT3G07010 319 / 4e-109 Pectin lyase-like superfamily protein (.1) AT1G04680 318 / 1e-108 Pectin lyase-like superfamily protein (.1) AT4G24780 311 / 4e-106 Pectin lyase-like superfamily protein (.1.2) AT5G48900 310 / 9e-106 Pectin lyase-like superfamily protein (.1) AT3G24230 306 / 6e-104 Pectate lyase family protein (.1) AT1G67750 303 / 6e-103 Pectate lyase family protein (.1) AT3G27400 303 / 8e-103 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038157 [exp] 388 / 7e-136 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 360 / 3e-125 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 358 / 3e-124 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 332 / 2e-114 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 333 / 5e-114 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 308 / 7e-105 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 307 / 1e-104 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10013667 [exp] 297 / 1e-102 AT5G63180 469 / 4e-167 Pectin lyase-like superfamily protein (.1) Lus10013668 [exp] 292 / 1e-100 AT5G63180 424 / 2e-149 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178100 [exp] 348 / 2e-120 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G238800 [exp] 342 / 4e-118 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 337 / 5e-116 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 335 / 4e-115 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 306 / 2e-104 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 301 / 4e-102 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 299 / 1e-101 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 299 / 1e-101 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 298 / 1e-100 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.006G122000 [exp] 267 / 4e-88 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10042509 pacid=23153639 polypeptide=Lus10042509 locus=Lus10042509.g ID=Lus10042509.BGIv1.0 annot-version=v1.0 ATGGCTGATGGAGATGGGGTTTCCATTTTCGACTCGAGCCATATTTGGGTAGACCACAACTCTCTGTCTAACTGCGCCGATGGTCTCATTGATGCCATTA TGGGATCTACTGCTATTACCATTTCCAACAACTTCTTTACCCACCATAATGAGGTTATTCTATTGGGACATAGTGACTCGTACGTGAGGGACAAGCAAAT GCAGGTGACTATTGCGTACAATCACTTTGGTGAAGGACTTATCCAGAGGATGCCAAGGTGTCGGCACGGATACTTCCATGTGGTGAACAACGACTACACA CACTGGGAAATGTATGCAATAGGAGGAAGTGCGAATCCAACCATTAACAGCCAAGGCAATAGATTCCTTGCCCCGAACAACCCTTTTGCCAAGGAGGTGA CGAAGAGAGTGGAAACGAACAATGGAGTGTGGAAGAGTTGGAACTGGAGGTCAGAAGGGGATCTGCTACTGAATGGGGCTTACTTCAAACCATCAGGAGC AGGAGCAGGAGCCAGCTACGCTAGGGCTTCAAGCTTAGGAGCGAAACCCTCTTCTTTGGTTGGGATGATCACTTCCACTTCTGGTGCCTTGGTCTGCCGC AGGGGCCGCTCCTGTTGA
AA sequence Show only first row Show all	>Lus10042509 pacid=23153639 polypeptide=Lus10042509 locus=Lus10042509.g ID=Lus10042509.BGIv1.0 annot-version=v1.0 MADGDGVSIFDSSHIWVDHNSLSNCADGLIDAIMGSTAITISNNFFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYT HWEMYAIGGSANPTINSQGNRFLAPNNPFAKEVTKRVETNNGVWKSWNWRSEGDLLLNGAYFKPSGAGAGASYARASSLGAKPSSLVGMITSTSGALVCR RGRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	0	1
AT5G14230			unknown protein		Lus10041588 [exp]	2.4	0.7696
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	5.2	0.8071
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	6.2	0.7741
AT5G14230			unknown protein		Lus10022339 [exp]	6.6	0.7641
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	16.0	0.7125
					Lus10042511 [exp]	17.7	0.7377
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	27.9	0.7583
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	30.3	0.7308
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	34.0	0.7316
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	35.7	0.7221

Compare expression of checked genes

Lus10042509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.