Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07010 81 / 2e-18 Pectin lyase-like superfamily protein (.1) AT1G04680 76 / 1e-16 Pectin lyase-like superfamily protein (.1) AT3G24230 75 / 3e-16 Pectate lyase family protein (.1) AT4G24780 74 / 8e-16 Pectin lyase-like superfamily protein (.1.2) AT3G53190 66 / 4e-13 Pectin lyase-like superfamily protein (.1) AT3G24670 63 / 5e-12 Pectin lyase-like superfamily protein (.1) AT5G63180 57 / 4e-10 Pectin lyase-like superfamily protein (.1) AT1G67750 56 / 1e-09 Pectate lyase family protein (.1) AT3G27400 56 / 1e-09 Pectin lyase-like superfamily protein (.1) AT4G22080 56 / 1e-09 RHS14 root hair specific 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011885 [exp] 104 / 1e-26 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 102 / 4e-26 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 94 / 7e-23 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 90 / 2e-21 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011258 [exp] 72 / 6e-15 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 71 / 8e-15 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018429 [exp] 68 / 1e-13 AT1G11920 437 / 8e-152 Pectin lyase-like superfamily protein (.1) Lus10005254 [exp] 62 / 1e-11 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10018430 [exp] 61 / 3e-11 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238800 [exp] 100 / 2e-25 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 100 / 3e-25 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 80 / 5e-18 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 79 / 1e-17 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 66 / 7e-13 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 64 / 2e-12 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 64 / 2e-12 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G051800 [exp] 57 / 3e-10 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 54 / 8e-09 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008100 [exp] 50 / 8e-08 AT4G22080 504 / 2e-179 root hair specific 14 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042510 pacid=23153816 polypeptide=Lus10042510 locus=Lus10042510.g ID=Lus10042510.BGIv1.0 annot-version=v1.0 ATGCCCCGGAGAGCTCCGCACCATGGCGTTCCCAGTAGGCTTGCAATCGTGGATGTTGAGCCCGTGTATTATAATGTTCGTCACGAATTGGATTGTGATG CATCCCCCATTGGCAATGTGTACATTGGCTCCCCTGCCGTCTATGGTCTTGAAGCTGTTCATGATCAGCTCTTGTTTCAACGTGATCACCATGTCCCTTT TGAACACTATCCACAACGGCATGTCCTGTATCACCGCGTGTCGGAGCGTCCCAGGTCTCGGGTTGACTGCATCGTCGTCGCGGGGATCCGTGACCACGTA GTACCTCCCGTCGCGGCCGCCGACTGCGTTGCGGCGGCCCGCCGCCTGCGTTCGGGCCGAAGCCGATGGCGCAGTCGGCTAACCGTTTTCGGTGAGTTTG CCAGTGTGGGTCGCACCGCCAGCAGTCGTCGATTGGGTTGCCCGTTGAGCATGAGAAGAATCCTAGTTTCCTTCTTGCAGTGCTATTCATAA
AA sequence Show only first row Show all	>Lus10042510 pacid=23153816 polypeptide=Lus10042510 locus=Lus10042510.g ID=Lus10042510.BGIv1.0 annot-version=v1.0 MPRRAPHHGVPSRLAIVDVEPVYYNVRHELDCDASPIGNVYIGSPAVYGLEAVHDQLLFQRDHHVPFEHYPQRHVLYHRVSERPRSRVDCIVVAGIRDHV VPPVAAADCVAAARRLRSGRSRWRSRLTVFGEFASVGRTASSRRLGCPLSMRRILVSFLQCYS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042510 [exp]	0	1
AT2G35470			unknown protein		Lus10035375 [exp]	2.0	0.7941
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	7.5	0.7818
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	13.0	0.8106
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	18.2	0.7974
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10007784 [exp]	43.6	0.7030
AT4G00380		FDM2	factor of DNA methylation 2, X...		Lus10005463 [exp]	46.5	0.7775
AT1G73120			unknown protein		Lus10022961 [exp]	49.5	0.7782
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	59.0	0.7619
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	59.4	0.7764
AT5G66580			unknown protein		Lus10000739 [exp]	69.3	0.7105

Compare expression of checked genes

Lus10042510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.