Plant FIBer expression Database

Lus10042514 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G32470 695 / 0 Haem oxygenase-like, multi-helical (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021977
[exp]
1070 / 0 AT5G32470 728 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10027948
[exp]
805 / 0 AT5G32470 700 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10000819
[exp]
635 / 0 AT5G32470 575 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021976
[exp]
132 / 3e-36 AT5G32470 94 / 3e-23 Haem oxygenase-like, multi-helical (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G022700
[exp]
833 / 0 AT5G32470 756 / 0.0 Haem oxygenase-like, multi-helical (.1)
Potri.013G049300
[exp]
823 / 0 AT5G32470 766 / 0.0 Haem oxygenase-like, multi-helical (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0230 HO PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence
>Lus10042514 pacid=23181840 polypeptide=Lus10042514 locus=Lus10042514.g ID=Lus10042514.BGIv1.0 annot-version=v1.0
ATGGCGATCCCTCCAAAGCTCATGTCATCCACCTCCATTCTTTCCTCCGCCTCTAGTCTCGGAAACATCTCCTCCGAGCACGGTCTCGCTGCCAAGCTCT
GGATCAAGTTCCGCCGCGAATTGCATTTCGCTATGTACTCTCCCTTCCTCGTCTGCCTTGCCTCCGGGAAGCTGGAGATTGACTCCTTCAGGCATTTCGT
CTCTCAGGATTTCCATTTCCTCAAGGCTTTCGCTCATGCGTATGAATTGGCTGAAGAGTGTGCTGATGATGATGATGCAAAGTTAGCAATTGCCGACTTG
AGAAAAGCTGTTGTGGAGGGGCTCAAAAAGCACAATTCAGTTGTTATGGAATGGGGTATCGACCCTGCTAAAGAAGTCAGTGTAGATCCTGCTACTGTCA
AATACACAGATTTTTTGCTGGCTACAGCATCTGGAAAAGTAGAAGGTGTAAAAGGTCCTGGTAAACTGGCTACTCCTTTTGAGCGAACAAAGATTGCAGC
TTACATTCTTGGTGCCATAGCACCTTGCATGCGGTTTTATGCCTTCCTTGGTAAGGAGCTACAGGAACTTGTTGATTCAAATGATGACAGTCACCCATAT
AAGAAGTGGATTGAAGATTATTCATGTGATAAGTTTCAGGTATCAGCTTTCCAAACTGAAGATTTGCTTGAAAAACTCAGTGTCTGTTTGACGGGAGAAG
AGCTGGATGTAATCGAGAAACTTTATCACCAAGGCATGAAACACGAAACAGAGTTCTTCAATGCACAGCCGCTTGAACAGCCTACAGTAGTGCCGTTGAC
AAAAGTTCATAACCCTGATGAAGAGCGTCTTGTGATATTTTCTGATTTTGATTTGACATGCACTGTTGTTGATTCATCTGCGATCTTAGCTGAAATTGCC
ATTGTAACTGCACCAAAGTCTGACCTGCCTCAATCTGAGAATCAAATTGTGCGGATGTCATCAGCTGAGCTGAGGAATACTTGGGGACTTATCTCTACTC
AATATACAGAAGAATATGAACAGTGCATTGAAAGCATCTTACCTCCTGAGAAAGTGGAGTTCAACTTTGAAGCTCTTTGCAAAGCACTTGAGCAACTTTC
AGTCTTTGAAAGAAGAGCAAATTCTAGAGTCATTGAGTCTGGAGTTCTCAAAGGTTTGAATCTTGAAGACATAAAACGAGCAGGCGAGAGACTACTTCTT
CAAGATGGCTGCAGTAGTTTCTTCCAGAAAATTACAGGGAACGAGAAACTGAATTTGAAAGTCAATGTGCTGTCATATTGTTGGTGTGCAGATCTCATCA
GATCAGCCTTCTCATCAGGGGGTTTGGGTGATGTCAGCGTAAACGCAAATGAGCTGACCTTTGAAGAGTCGATCTCAACAGGAGAAATCATTAACAATCT
GGAGTCCCCAATGGACAAAGCTGAAGCTTTCCGCAACATATTGAAGAGCTATGGAGATGATAAGAGGAACTTTACATTGTACATTGGAGATTCCGTGGGT
GACCTGCTCTGCCTTCTTCAGGCCGATGTGGGAATCGTAATTGGATCTAGCTCAAGCTTGAGGAAAATAGGGAGCCAGTATGGTGTTTCTTTTGTGCCAC
TGTTCTCTGGGGTGCTGCAGAAGCAGAAGGAATGTGTTGAAGGAAGTTGCTCGATGGGAAAGAGCCTGTCTGGCACTCTGTACACGGTTTCTAGCTGGGC
TGAGATACATGCCCTCATTTTGGGATGGTAG
AA sequence
>Lus10042514 pacid=23181840 polypeptide=Lus10042514 locus=Lus10042514.g ID=Lus10042514.BGIv1.0 annot-version=v1.0
MAIPPKLMSSTSILSSASSLGNISSEHGLAAKLWIKFRRELHFAMYSPFLVCLASGKLEIDSFRHFVSQDFHFLKAFAHAYELAEECADDDDAKLAIADL
RKAVVEGLKKHNSVVMEWGIDPAKEVSVDPATVKYTDFLLATASGKVEGVKGPGKLATPFERTKIAAYILGAIAPCMRFYAFLGKELQELVDSNDDSHPY
KKWIEDYSCDKFQVSAFQTEDLLEKLSVCLTGEELDVIEKLYHQGMKHETEFFNAQPLEQPTVVPLTKVHNPDEERLVIFSDFDLTCTVVDSSAILAEIA
IVTAPKSDLPQSENQIVRMSSAELRNTWGLISTQYTEEYEQCIESILPPEKVEFNFEALCKALEQLSVFERRANSRVIESGVLKGLNLEDIKRAGERLLL
QDGCSSFFQKITGNEKLNLKVNVLSYCWCADLIRSAFSSGGLGDVSVNANELTFEESISTGEIINNLESPMDKAEAFRNILKSYGDDKRNFTLYIGDSVG
DLLCLLQADVGIVIGSSSSLRKIGSQYGVSFVPLFSGVLQKQKECVEGSCSMGKSLSGTLYTVSSWAEIHALILGW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G32470 Haem oxygenase-like, multi-hel... Lus10042514
[exp]
0 1
AT1G05170 Galactosyltransferase family p... Lus10040062
[exp]
1.4 0.7951
AT5G32470 Haem oxygenase-like, multi-hel... Lus10021977
[exp]
2.8 0.7613
AT5G32470 Haem oxygenase-like, multi-hel... Lus10021976
[exp]
3.0 0.7666
AT2G47160 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- t... Lus10043101
[exp]
5.7 0.7706
AT5G10190 Major facilitator superfamily ... Lus10027264
[exp]
8.4 0.7123
AT1G05280 Protein of unknown function (D... Lus10027153
[exp]
9.6 0.6899
AT2G28470 BGAL8 beta-galactosidase 8 (.1.2) Lus10000271
[exp]
9.7 0.7008
AT2G20300 ALE2 Abnormal Leaf Shape 2, Protein... Lus10022848
[exp]
13.2 0.7575
AT3G54120 Reticulon family protein (.1) Lus10035537
[exp]
15.3 0.7277
AT4G32840 PFK6 phosphofructokinase 6 (.1) Lus10005488
[exp]
16.9 0.7257

Lus10042514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.