Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28510 424 / 4e-151 ATPHB1 prohibitin 1 (.1) AT1G03860 421 / 7e-150 ATPHB2 prohibitin 2 (.1.2.3) AT2G20530 418 / 1e-148 ATPHB6 prohibitin 6 (.1.2) AT5G44140 398 / 4e-141 ATPHB7 prohibitin 7 (.1) AT3G27280 274 / 6e-92 ATPHB4 prohibitin 4 (.1.2) AT5G40770 272 / 3e-91 ATPHB3 prohibitin 3 (.1) AT5G14300 218 / 3e-70 ATPHB5 prohibitin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021978 [exp] 530 / 0 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3) Lus10019161 [exp] 469 / 5e-169 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10034395 [exp] 465 / 2e-167 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10032072 [exp] 264 / 5e-88 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10014604 [exp] 263 / 8e-88 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10035521 [exp] 162 / 5e-48 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10027776 [exp] 129 / 2e-36 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134700 [exp] 467 / 5e-168 AT4G28510 463 / 2e-166 prohibitin 1 (.1) Potri.017G017400 [exp] 429 / 5e-153 AT4G28510 457 / 5e-164 prohibitin 1 (.1) Potri.017G065800 [exp] 275 / 2e-92 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.001G335700 [exp] 272 / 2e-91 AT5G40770 429 / 3e-153 prohibitin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10042515 pacid=23181893 polypeptide=Lus10042515 locus=Lus10042515.g ID=Lus10042515.BGIv1.0 annot-version=v1.0 ATGGATCCGAAGAAGGGCAAGCCTCTTTCTCAAGCCCAAGCTGGATCTCGCATGGTCAAGTACGGAGCACTCGCCGGAATCGCTATCTACGCCGCTGCTA ACTCCCTCTACAATGTTGACGGTGGGCACCGTGCCATTGTCTTCAACCGGATTAAGGGTGTCAAAGATAAGGTTTATCCAGAAGGAACTCATTTCCTCCT CCCCTGGTTTGAGCGCCCGATCATCTATGACGTCCGCGCCCGTCCTCATCTTGTTGAGAGTACATCTGGAAGCCGTGATCTTCAAATGGTCAAGATTGGG CTTCGAGTTCTTACTCGTCCTCAGGCTGACCAGCTACCCAAAATTTATCGGACTGTTGGTACAAATTACAATGAGAGAGTACTGCCTTCCATCATTCACG AGACATTAAAGTCGGTGGTTGCTCGGTACAATGCCAGCCAGCTCATTACTCAAAGAGAGGCTGTCAGTAGAGAGATAAGGAAGATATTGACAGAGAGAGC AGCTTTCTTCAACATCGCACTTGACGATGTGTCCATAACTAACCTGACTTTCGGTAGAGAGTTCACTGCTGCTATTGAGGCGAAACAAGTGGCTGCTCAG GAGGCCGAAAGGGCTAAGTTCGTTGTGGAGAAGGCTGAACAGGACAAGAGGAGTGCTATAATCAGAGCAGAGGGAGAAGCTAAGAGTGCTCAGCTGATTG GACAAGCAATTGCAAGCAATCCTGCTTTCATAACACTAAGGAAGATTGAAGCTGCGAGAGATATTGCTCAGACAATGTCGGGTTCGTCAAACAAGGTGTA CCTTGACTCGAGCGATCTGCTGTTGAACCTGCACGAGATGGAAATGCAGGCCACTGGAAAGAAATGA
AA sequence Show only first row Show all	>Lus10042515 pacid=23181893 polypeptide=Lus10042515 locus=Lus10042515.g ID=Lus10042515.BGIv1.0 annot-version=v1.0 MDPKKGKPLSQAQAGSRMVKYGALAGIAIYAAANSLYNVDGGHRAIVFNRIKGVKDKVYPEGTHFLLPWFERPIIYDVRARPHLVESTSGSRDLQMVKIG LRVLTRPQADQLPKIYRTVGTNYNERVLPSIIHETLKSVVARYNASQLITQREAVSREIRKILTERAAFFNIALDDVSITNLTFGREFTAAIEAKQVAAQ EAERAKFVVEKAEQDKRSAIIRAEGEAKSAQLIGQAIASNPAFITLRKIEAARDIAQTMSGSSNKVYLDSSDLLLNLHEMEMQATGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	0	1
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	1.4	0.9797
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	2.8	0.9782
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	4.5	0.9706
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	4.9	0.9611
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	5.3	0.9549
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	5.3	0.9639
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	5.5	0.9728
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	6.7	0.9661
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	6.9	0.9639
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	8.7	0.9578

Compare expression of checked genes

Lus10042515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.