Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11260 538 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 526 / 0 STP12 sugar transporter protein 12 (.1) AT3G19940 473 / 2e-163 Major facilitator superfamily protein (.1) AT3G19930 461 / 2e-158 ATSTP4, STP4 sugar transporter 4 (.1) AT1G50310 458 / 3e-157 ATSTP9 sugar transporter 9 (.1) AT5G23270 445 / 3e-152 ATSTP11, STP11 sugar transporter 11 (.1) AT5G26340 445 / 4e-152 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 431 / 6e-147 STP7 sugar transporter protein 7 (.1) AT1G77210 384 / 9e-129 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G61520 377 / 6e-126 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018422 [exp] 520 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 506 / 2e-176 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 468 / 3e-161 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002450 [exp] 437 / 6e-149 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 435 / 5e-148 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10040991 [exp] 429 / 1e-145 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10036325 [exp] 426 / 5e-145 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10021924 [exp] 418 / 2e-141 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10009656 [exp] 390 / 1e-130 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G110630 [exp] 538 / 0 AT1G11260 629 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 537 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 533 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 533 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G033600 [exp] 524 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 517 / 2e-180 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.005G090700 [exp] 478 / 2e-165 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 478 / 2e-165 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 468 / 2e-161 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 452 / 4e-155 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10042516 pacid=23181715 polypeptide=Lus10042516 locus=Lus10042516.g ID=Lus10042516.BGIv1.0 annot-version=v1.0 ATGGAAGATATTCCAGCAGCTGGATCGTCGGATCCGAAGGAGAAGTTGATAGCGTACGAGGGAGAGCTAACACGGTATGTGGTCGGGGCGTGCCTCGTTG CAGGCATGGCTGGTATTCTCTTCGGATACGATATTGGTATTTCAGGAGGGGTGACGTCAATGGGGCCATTCCTGCGCAAATTCTTCCCAAAAGTGTACGC AAAGCAAGCAGCGAACAAGTCAAGGAATCAGTACTGCAAGTTCGACGACGTCGGATTGACAATGTTCACGTCTTCACTCTACTTGGCGGCGCTGGCTTCC TCGCTCGTTGCGTCACGAGTCACCAGAGAATTGGGTAGGAAATTTTCGATGGTGGTTGGTGGTTTCATATTTTTCGTTGGAGCTGCCCTTAATGCCTTTG CCGTGGGCCTCTGGATGCTTATTTTGGGCCGCCTTCTGCTTGGCATTGGTGTTGGCTTCTCGGTCCAGGCCGCACCACTTTACGTATCAGAAATGGCGCC ATACAACCACCGTGGTGCACTGAACGTGTTCTTCCAACTAAGCATCACAGTAGGAATACTAACTGCCAACGTAGTCAACTACTTCACTCCGAAGATCACT TCTTTCTCCGGATGGCGACTAAGCCTAGGAGGAGCATGCATCCCTTCCTTTTTCATCTTCATCTCCGCAATCTTCCTACCCAACACTCCAAACTCTATTC TCGAGCGTAACCCGGACGACAACGGGGACCAAGCTCTTGCAATGCTATGCAAAATTCGAGGGCTCACTCCCCAACAAGCCACGGCCGAGTTCCAAGACTT GGCAGCAGCAGCCAGAGCCTCTGGGGAAGTCAAAAGTCCCTGGAGGAACATCTTGCTAAGGAAGTATAGACCGCAAGTCACGATGGCGGTCGTCATTCAA GCCGCATTGCAACTGAGCGGGATAAACGTCGTGATGTTCTACGCTCCGGTTTTGTTCAGCAGCATCGGGTTCGGAGACGATGCCGCGTTGCTTTCCGCAC TCGTGACCGGCGCGGTCAACGTCGCGGCGACTTTGGTCGCCGTCTACGGAGTTGACCGATGGGGGAGGAGGGTCCTGTTTATTTACGGTGGAGCCCAGAT GTTTGTGTTCCAAGTATTGGTGGCCGGGTTTATCGGGTGGAAGTTTGGGGTGACGGGTGACGTGTCGGTTCTGCCGAAATGGTACGCTGTTTTGATAGTG ACGTTCATATGCGGCTACGTGTCCGGATTCGCCTGGTCGTGGGGCCCACTGGGGGTGGTGGTGACGGCCGAAATATTCCCGCTGGAAATACGGTCGGCGG CGCAGAGCATAGCGATATCGACCAGCATGCTGTTCACGTTCTTGATAGCGCAGCTGTTTCTGAGCATGCTGTGTCAAATGAAGTTCGGACTGTTCTTGTT CTTCGCCTTCTTTCTGGCCGCCACATGTCTGTATGTATACTTGTTTCTCCCGGAGACCAAAAACGTCCCAATCGAGTCGGTTCACCGTGTCTGGGAGAAG CATTGGTTTTGGAAGAGATTCGTTCTGAAAGATGCAGCAGTAGCAGCTTAA
AA sequence Show only first row Show all	>Lus10042516 pacid=23181715 polypeptide=Lus10042516 locus=Lus10042516.g ID=Lus10042516.BGIv1.0 annot-version=v1.0 MEDIPAAGSSDPKEKLIAYEGELTRYVVGACLVAGMAGILFGYDIGISGGVTSMGPFLRKFFPKVYAKQAANKSRNQYCKFDDVGLTMFTSSLYLAALAS SLVASRVTRELGRKFSMVVGGFIFFVGAALNAFAVGLWMLILGRLLLGIGVGFSVQAAPLYVSEMAPYNHRGALNVFFQLSITVGILTANVVNYFTPKIT SFSGWRLSLGGACIPSFFIFISAIFLPNTPNSILERNPDDNGDQALAMLCKIRGLTPQQATAEFQDLAAAARASGEVKSPWRNILLRKYRPQVTMAVVIQ AALQLSGINVVMFYAPVLFSSIGFGDDAALLSALVTGAVNVAATLVAVYGVDRWGRRVLFIYGGAQMFVFQVLVAGFIGWKFGVTGDVSVLPKWYAVLIV TFICGYVSGFAWSWGPLGVVVTAEIFPLEIRSAAQSIAISTSMLFTFLIAQLFLSMLCQMKFGLFLFFAFFLAATCLYVYLFLPETKNVPIESVHRVWEK HWFWKRFVLKDAAVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	0	1
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	1.7	0.9845
AT5G41810			unknown protein		Lus10003901 [exp]	2.8	0.9845
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	3.2	0.9805
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	3.3	0.9741
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	3.5	0.9814
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	3.9	0.9823
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	5.5	0.9747
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	5.7	0.9728
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	5.7	0.9767
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	6.0	0.9714

Compare expression of checked genes

Lus10042516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.