Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39160 250 / 2e-84 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 249 / 3e-84 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 248 / 9e-84 RmlC-like cupins superfamily protein (.1) AT5G39110 248 / 1e-83 RmlC-like cupins superfamily protein (.1) AT5G39150 248 / 1e-83 RmlC-like cupins superfamily protein (.1) AT5G39120 248 / 1e-83 RmlC-like cupins superfamily protein (.1) AT5G39180 248 / 2e-83 RmlC-like cupins superfamily protein (.1) AT3G05950 237 / 3e-79 RmlC-like cupins superfamily protein (.1) AT4G14630 233 / 8e-78 GLP9 germin-like protein 9 (.1) AT5G38960 233 / 1e-77 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021980 [exp] 401 / 6e-144 AT5G39160 249 / 5e-84 RmlC-like cupins superfamily protein (.1.2.3) Lus10006538 [exp] 270 / 4e-92 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10000622 [exp] 268 / 2e-91 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10006536 [exp] 262 / 4e-89 AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Lus10033767 [exp] 262 / 4e-89 AT5G39150 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 261 / 1e-88 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10003114 [exp] 255 / 2e-86 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 255 / 2e-86 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 230 / 2e-76 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026200 [exp] 263 / 2e-89 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 262 / 4e-89 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 262 / 4e-89 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 261 / 1e-88 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 260 / 2e-88 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 260 / 2e-88 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 260 / 2e-88 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.013G052000 [exp] 259 / 8e-88 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.013G052100 [exp] 258 / 1e-87 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1) Potri.013G052300 [exp] 256 / 2e-86 AT5G39110 281 / 2e-96 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10042517 pacid=23181663 polypeptide=Lus10042517 locus=Lus10042517.g ID=Lus10042517.BGIv1.0 annot-version=v1.0 ATGAATCGACAAGTTCAACACTACCTTTCCTTCCTTGCCTTGGCTCTATTCCTCTTTGCTCAGCTGTCTCCACTGATCCTCGTCTCAGCTGTCGATTCCG CTCCTCTCCAGGACTTCTGTGTCGCTGTCAATGACACCCAAAACAGTGTTTTTGCGAACGGGCATGTGTGCAAAGACCCGAAGAAAGTAACGGCAGACGA TTTCTTCCTGACCGGTCTTGATAAACCCGGTAACACTTCCAACCCGTTTGGGTCCAAGGTCACCCTCATCAACGTTGACCGGATTCCGGGGCTCAATACG CTGGGGATATCTCTGGCACGGGTTGACTACGTCCCGAACGGCGGGGGGAACCCGCTCCATTACCACCCTCGAGCCACAGAGCTCTTTCTCGCGCTCGAGG GGAAGTTTTACGTCGGGTTCATCGCTTCGAATCCGGACCGGTTGATTTCCAAAGTGCTGAAGCCTGGAGATTTGTTTGTTTTCCCCATTGGAAGGATCCA CTTTCAGTACAACATTGGGAAAACTCCAGGCAGGGCTGTTTCTGGGTTGAGCAGCCAGAACCCGGGTATCGTTGTGATCGCCAACGCCGTTTTCGGGTCA AACCCAAGCATTGATCCGAGTTTGCTCGCCGCTGCCTTTCGGGCGGACAAGGAGTTGGTGGAGGACTTGCAGAAGAAATTCTAG
AA sequence Show only first row Show all	>Lus10042517 pacid=23181663 polypeptide=Lus10042517 locus=Lus10042517.g ID=Lus10042517.BGIv1.0 annot-version=v1.0 MNRQVQHYLSFLALALFLFAQLSPLILVSAVDSAPLQDFCVAVNDTQNSVFANGHVCKDPKKVTADDFFLTGLDKPGNTSNPFGSKVTLINVDRIPGLNT LGISLARVDYVPNGGGNPLHYHPRATELFLALEGKFYVGFIASNPDRLISKVLKPGDLFVFPIGRIHFQYNIGKTPGRAVSGLSSQNPGIVVIANAVFGS NPSIDPSLLAAAFRADKELVEDLQKKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39160			RmlC-like cupins superfamily p...		Lus10042517 [exp]	0	1
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	8.6	0.9068
AT1G65820			microsomal glutathione s-trans...		Lus10007375 [exp]	12.0	0.9129
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017676 [exp]	12.1	0.8229
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10012223 [exp]	18.8	0.8874
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	25.5	0.8978
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	25.6	0.8817
AT5G53110			RING/U-box superfamily protein...		Lus10012628 [exp]	28.6	0.8564
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	30.3	0.8940
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10041667 [exp]	31.5	0.8381
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	32.3	0.8845

Compare expression of checked genes

Lus10042517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.