Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44290 108 / 6e-26 NAC ANAC060 NAC domain containing protein 60 (.1) AT5G22290 108 / 9e-26 NAC FSQ6, FAN, ANAC089 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) AT2G27300 103 / 5e-24 NAC NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) AT1G33060 105 / 7e-24 NAC ANAC014 NAC 014 (.1.2) AT3G49530 103 / 2e-23 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT4G35580 101 / 1e-22 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT3G04060 97 / 6e-22 NAC ANAC046 NAC domain containing protein 46 (.1) AT5G24590 98 / 1e-21 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT5G61430 96 / 1e-21 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT3G10480 97 / 2e-21 NAC ANAC050 NAC domain containing protein 50 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030174 [exp] 105 / 2e-25 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10013316 [exp] 106 / 9e-25 AT5G22290 285 / 5e-94 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10005144 [exp] 103 / 1e-24 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10005204 [exp] 105 / 3e-24 AT5G22290 292 / 8e-97 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10043402 [exp] 101 / 3e-23 AT5G22290 262 / 4e-86 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10010148 [exp] 102 / 6e-23 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 102 / 8e-23 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10030175 [exp] 102 / 1e-22 AT4G35580 146 / 1e-37 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 101 / 1e-22 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161300 [exp] 107 / 1e-24 AT2G27300 273 / 4e-88 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) Potri.011G149300 [exp] 104 / 1e-23 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.002G154200 [exp] 99 / 1e-23 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.012G007500 [exp] 103 / 3e-23 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.002G181800 [exp] 101 / 9e-23 AT4G01550 138 / 1e-35 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Potri.014G108000 [exp] 97 / 2e-22 AT4G35580 176 / 6e-52 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 96 / 2e-22 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 95 / 2e-22 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.014G107700 [exp] 97 / 3e-22 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.015G004100 [exp] 99 / 9e-22 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10042518 pacid=23181917 polypeptide=Lus10042518 locus=Lus10042518.g ID=Lus10042518.BGIv1.0 annot-version=v1.0 ATGCTGAACACTCTGGTTCCTCCTCCTCCTCAGGTCTTCTCCGACCAACTCCCTATTTTAGGAAGTGGAATGAATAGTGGTTATATACTACCCACATCAC CAAATAACGTCTTCGACATCGGAGACGAGAGATTGATGAGTCATTACTCGATCAATGGTAGTAATCTTATACTACCCACATCACCAAACATCTTTCTCCA CTGTGAGGACAATTTGATTTGTCCTACGGACGAGAGATTGATGAGTCATTATCCGATGAACGGTAGTAATCTTGTACTACCCACATCACCAAACAACTTT CTCAATGGAGAGGATGATGAAATTCGTCGTCCAAACAAGAGATTGATGAGTCATTATCCTGATAATGGTAGTAATTTCAAACTACCCACATCACCAAACA ACTTTTTTAGCGGCATGGACAATCCAGCTTGCCCCCCAACGGTAAATAATTACCGAACTGATGGCAGCAGTCTCGTACTACTACCCACATCACCAAATAC AATTCTCAACAGCCCGACCGGCGAGATATTAACAAATCATTACTCGTCGGATGGTAGTAGTGTCGTACTACCCACATCACCAAACAGTTTTCTTATCAGC CAGGACAATCCAAATTGTCCCACAGGCGAGAGATTGAAAAGTCATTATCCTACATATCGAAGTACACCAACATCACCAAACAACTTCCTCGGAGGCAAGG AGGACAATCGATTTTGTCCCTCAGACGAGAGATTGATCAATCATTACTTGAAGCAGAAGATGCTCGGGAATGAAGACCAAGTAGATCAAATCCCGGAAGT CGACATCTTAAGCCGCGAGCCTTGGGATCTGCTGCCCATAACCGTTGATGATGAGCAATGTTACAAAGAAGCGTATTACTTTTGTCGTCGCCGGAGTTAC TTTAAGAGTAAAGACAGATACAAAAGGACGACAGGAGACGGGTACTGGAAACCCACCGGAAAACCTCGCCACATTAAGAATGGAGCTAACGGAGAAGTGA TCGGAAGCAAAAGGTGCTTAGTTTTCCATTTTGGCCGATCGGTTGGACAGAGTACCGGCTATACTATGCACGAGTATTCTGCCGCCGCCGCCAGCTCGTC GCAGCCAGTGGTAGATTTGGTACTGTGCAAGGTCATGAAGAAGAGCAACAAAACTAAAGCAGCAACGAAGCGAAAGGCAAAAACTGTATTAGTATCACAG CCGCCCTCCGATGAAAACGTGAACACCATTACTACTGCGCCATTGCAAACGGCAGAAGAACCGCCCGCAATTTGCCAAATGGATTCTAATTTTGGAAACC AAGACACCATAACTCCCACTAGTCAGTCACCATCAACTCAGAATGACGGCGGAATAGAAGATTTCTCAGAGATAGAGCTGGAAATCGACGGTGAAATATT CCGGCTGCCTGGTGTCGATTTTAAATTCGATTTTGAGCCCTGGGATAAGCTGCAGCAGCAGCAGCAGCCGCCACCGCTTGAGGCAGAGTATTTTCCGGGC ATGGTTCAGCAATCTGGTTGA
AA sequence Show only first row Show all	>Lus10042518 pacid=23181917 polypeptide=Lus10042518 locus=Lus10042518.g ID=Lus10042518.BGIv1.0 annot-version=v1.0 MLNTLVPPPPQVFSDQLPILGSGMNSGYILPTSPNNVFDIGDERLMSHYSINGSNLILPTSPNIFLHCEDNLICPTDERLMSHYPMNGSNLVLPTSPNNF LNGEDDEIRRPNKRLMSHYPDNGSNFKLPTSPNNFFSGMDNPACPPTVNNYRTDGSSLVLLPTSPNTILNSPTGEILTNHYSSDGSSVVLPTSPNSFLIS QDNPNCPTGERLKSHYPTYRSTPTSPNNFLGGKEDNRFCPSDERLINHYLKQKMLGNEDQVDQIPEVDILSREPWDLLPITVDDEQCYKEAYYFCRRRSY FKSKDRYKRTTGDGYWKPTGKPRHIKNGANGEVIGSKRCLVFHFGRSVGQSTGYTMHEYSAAAASSSQPVVDLVLCKVMKKSNKTKAATKRKAKTVLVSQ PPSDENVNTITTAPLQTAEEPPAICQMDSNFGNQDTITPTSQSPSTQNDGGIEDFSEIELEIDGEIFRLPGVDFKFDFEPWDKLQQQQQPPPLEAEYFPG MVQQSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10042518 [exp]	0	1
AT2G36670			Eukaryotic aspartyl protease f...		Lus10014391 [exp]	1.0	0.8009
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	5.5	0.7545
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10007216 [exp]	5.7	0.6991
					Lus10018873 [exp]	6.5	0.7802
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	15.1	0.7529
					Lus10028567 [exp]	23.5	0.7417
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	30.3	0.6967
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	42.4	0.7114
AT2G41120			unknown protein		Lus10033361 [exp]	47.9	0.7003
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	51.3	0.6785

Compare expression of checked genes

Lus10042518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.