Plant FIBer expression Database

Lus10042519 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04160 271 / 2e-80 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021983
[exp]
1092 / 0 AT3G04160 313 / 4e-96 unknown protein
Lus10021982
[exp]
1031 / 0 AT3G04160 378 / 2e-121 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G029400
[exp]
467 / 1e-154 AT3G04160 397 / 1e-127 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF05253 zf-U11-48K U11-48K-like CHHC zinc finger
Representative CDS sequence
>Lus10042519 pacid=23181886 polypeptide=Lus10042519 locus=Lus10042519.g ID=Lus10042519.BGIv1.0 annot-version=v1.0
ATGAACCCTTCTTCAGCTCCACCTCCCTATCATTCCCCATTCCCTTATCCCCCTCCTCCAAACCCTAATCCCTCCCCTAACATCTTCTTCCATCCTCTCC
ACCGACCGCCGCCGCAGCAACAACAACCTCATCCGCCTCCTTACCAACTCCCACCTCCTCCGCCGCAACAACAACAACAACAATCGCCAGATTTCGCCGC
AGCTCCTCCAGTTCGCGATGTCTCCTCTACGCTCTCCTCCCTGACTGAGCTCATATCGCTCTCGCGGCAAACTCTCAGCTCACTCTCTTCCCTTATCGAT
TCAAAACCTTCTCCCGTGAAGGTGAATGATACTCATGTGCCTTGCCCTTACAATCCCCACCATCTTATGCCGCCGGAGTCTCTATTCATGCACACGCTTC
GCTGCCCTTCTCCGGTATGTGAGGATCCTACTTTTATTATTCAATCTCTTCTCTACCCTAAGACTTTGAACTTGCGTTTACAAGCTCAAACTCAATTTCA
CGAATCATCCGAGGAACGGAAGAGCGGTGAACTCAGCCTGTCATTGGGTAGTTATTTCAAGGAGTTCAAGTCCAACTTCTTTTACAAAGATTGTCCAGGT
GCTGTTAACTTCATCGAGTTGGAGAATCTAGGGAAAGTTGTTACGTTACCAGGCGTGTTATCCGTGGAATGTGCCGATTCTGTTGGTTTTAGAGAGAGGA
GACCTGATAGGTTTGATGGAAATAAGTTCAGAATTCTCTCATCTGAACTATGGACAATTACGAGAGAGGTTGAGGGTTGGGTTGATTATCCTACGCAGTA
CTCGTATGGAGTAGTTTGTGGAGTTCTGAGGTTAAATGTGGTTAAGATGAATGAATTGAGTGGTTGGATTATCACGAATTCTCCTCATTTCGGTTGTGTT
ATTGATGCATACATGAGAGACCATATCTCAGTGCTTGTTGGTCTATGCCTGAAAGCAATCAGAAGGGAAGCTTTGGTCTTGGTGGGTTGTGATACGCCCA
TTGAGAATTTAAGTTTTCCATGTCCTGTATCTGTTCAAGCTTTAAAGTGGCTTGCATCTCAGCTCTCTATATTATTTGTGGAGCTGAATGCAAAAAGATT
TACTATTTACATTTTTAAGCAATGCATACTGGAGGCTGCCAAAGAGGCATTGTTGTTCTGTTTGAGTCCAGACTTCAAAGAAAGCTCCAAAGGTTTGGAT
GACAATAAAAGTGAGACCAAGGATGGTAAGACTGAAGAGAGCACCCTTGAAGAATGTACAGAGCACGACAAAGATAAGAAAGCTGAGGCAGATGGTGTTG
TTGTGTCTCAAGTGGCAGCTGCAGTGGCAGCATTGCAAGAGCGTTCTTTACTAGAGGCTAAAATTAAGGCACTACGGAATTCTCAATTACTACCATCTTA
CCAACGGGCAGTTGAGCATACTTATTTGACAACTAGAGCTGATGAAGAACGGAAAAAGCATCCCGACTACCGGCCCACTATTGAGCATGATGGCTTCCGC
AAGCGATCAACAAACCAGGTAATGAGAGATATCATAGATGAATGCATGGAGGAAATCAAGCAATCGGGAGGCATCGGCTGCTATGATAAGGCGGCTGAGG
AAGTATGTGTTCCCGCCGAACCAATTAGTAACCTTGAGGTTTCTATGGATATTGGTGTGCATGCGCAAATAAATGGCAAATCCTCTAAAAAGACAACAGT
AACTACTGATCATCACCAGAGACAATCCTACTCTTGGCATGACAAAAGATCTGCAACCTCTGAGGATAGTCTGTACAAAGACAATGAGCGACTAGGACAA
GACCATTACTATTATCGTACGGAACCTAGGAACATTGAGGGTCATGGGAGACGCGTCAGAGACCACTATACCAAGAGTCCAGAAAGTCAGGGAAAGCATG
GCCGGTCACATGAGTGGAACAGTCGTAGAACAGAACGGAATTCTGTGGAGTTGACTGGAGTCAAGCATCAGAGCAAGTCCACTAGTAAAAACAGTCGCAA
TGATAGATCATCATCCTATGATGTCTTGGACTCTGATCACGGTCCCCATGTCCAGAAGAAACATAAGGTGTCGGATAAGAGGGACAGGCACGGAAGAAGC
TCGTATTCTCGTTCTCGTCATAGTTCAAGTCGAGATGCACAAGGTTTTGAAGATAGATATGATCCAACAAAATCTCTTGATGCCTAG
AA sequence
>Lus10042519 pacid=23181886 polypeptide=Lus10042519 locus=Lus10042519.g ID=Lus10042519.BGIv1.0 annot-version=v1.0
MNPSSAPPPYHSPFPYPPPPNPNPSPNIFFHPLHRPPPQQQQPHPPPYQLPPPPPQQQQQQSPDFAAAPPVRDVSSTLSSLTELISLSRQTLSSLSSLID
SKPSPVKVNDTHVPCPYNPHHLMPPESLFMHTLRCPSPVCEDPTFIIQSLLYPKTLNLRLQAQTQFHESSEERKSGELSLSLGSYFKEFKSNFFYKDCPG
AVNFIELENLGKVVTLPGVLSVECADSVGFRERRPDRFDGNKFRILSSELWTITREVEGWVDYPTQYSYGVVCGVLRLNVVKMNELSGWIITNSPHFGCV
IDAYMRDHISVLVGLCLKAIRREALVLVGCDTPIENLSFPCPVSVQALKWLASQLSILFVELNAKRFTIYIFKQCILEAAKEALLFCLSPDFKESSKGLD
DNKSETKDGKTEESTLEECTEHDKDKKAEADGVVVSQVAAAVAALQERSLLEAKIKALRNSQLLPSYQRAVEHTYLTTRADEERKKHPDYRPTIEHDGFR
KRSTNQVMRDIIDECMEEIKQSGGIGCYDKAAEEVCVPAEPISNLEVSMDIGVHAQINGKSSKKTTVTTDHHQRQSYSWHDKRSATSEDSLYKDNERLGQ
DHYYYRTEPRNIEGHGRRVRDHYTKSPESQGKHGRSHEWNSRRTERNSVELTGVKHQSKSTSKNSRNDRSSSYDVLDSDHGPHVQKKHKVSDKRDRHGRS
SYSRSRHSSSRDAQGFEDRYDPTKSLDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G04160 unknown protein Lus10042519
[exp]
0 1
AT2G16460 Protein of unknown function (D... Lus10042073
[exp]
1.0 0.8006
AT4G32850 PAP(IV), PAP(IV... poly\(A\) polymerase IV, poly\... Lus10005490
[exp]
2.4 0.7917
Lus10033536
[exp]
2.8 0.8003
AT1G03000 PEX6 peroxin 6 (.1) Lus10009814
[exp]
5.7 0.7783
AT3G25840 Protein kinase superfamily pro... Lus10021688
[exp]
7.3 0.7567
AT1G19110 inter-alpha-trypsin inhibitor ... Lus10039919
[exp]
10.6 0.6722
AT1G76630 Tetratricopeptide repeat (TPR)... Lus10025170
[exp]
14.0 0.7585
AT3G25840 Protein kinase superfamily pro... Lus10035031
[exp]
14.4 0.6617
AT5G62760 P-loop containing nucleoside t... Lus10004265
[exp]
14.7 0.7564
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Lus10013536
[exp]
16.1 0.7180

Lus10042519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.