Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18310 67 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021984 [exp] 255 / 1e-87 AT5G18310 76 / 2e-17 unknown protein Lus10009584 [exp] 52 / 1e-08 AT5G48500 126 / 3e-37 unknown protein Lus10020403 [exp] 52 / 2e-08 AT5G48500 127 / 7e-38 unknown protein Lus10006540 [exp] 45 / 3e-06 ND 37 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052600 [exp] 117 / 2e-33 AT5G18310 97 / 8e-26 unknown protein Potri.019G029600 [exp] 112 / 1e-31 AT5G18310 94 / 2e-24 unknown protein Potri.015G040500 [exp] 78 / 2e-19 AT5G18310 59 / 2e-12 unknown protein Potri.002G250800 [exp] 50 / 3e-08 AT5G48500 100 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042520 pacid=23181903 polypeptide=Lus10042520 locus=Lus10042520.g ID=Lus10042520.BGIv1.0 annot-version=v1.0 ATGGAGGAGTGCAAGAGGAGCGGGCAGATACCGGCGTTCGGAGACTGGAAGAACGCCAACGAGCTACCGATCACTCAGTACTTCGAGTGCGCCAGGCAAG CCGGGCTGATCCGTTACAGTAACTCCTCCGGCGAATGTGACTGCCCCGCGGCCGATTACCATAATCGTCACCGGTCTTCATACGCCGCCGCTGATTTCAA CAAGAATCAAAAGCACCAACATCGCAACAACAACTACAACCAGCCTCAGAGAAAGACAAGATTGAGGGAGAAGCGAGGCCCGGCGGCGCAAGTCAAGGAC ACGAAGCCTAGCAATCATCAACACGGCAGAGTTCGTGACGTCACCAACCCAACTCGCCACCAAAAGAAACATTCTACTATCCAAAACGACGCCGTTCCTA CTCCTCCTTCATCCGCCGCTCAACGGCCCAGGAATCCGGCGAGAGCACCAAAGCCGGTCGACGAGGACCTGTACAAGATCCCACCTCATCTCCTCCGTTC GTCCAAAAGGGTATCTTTCTGTTTGGGATATTCTGACTAG
AA sequence Show only first row Show all	>Lus10042520 pacid=23181903 polypeptide=Lus10042520 locus=Lus10042520.g ID=Lus10042520.BGIv1.0 annot-version=v1.0 MEECKRSGQIPAFGDWKNANELPITQYFECARQAGLIRYSNSSGECDCPAADYHNRHRSSYAAADFNKNQKHQHRNNNYNQPQRKTRLREKRGPAAQVKD TKPSNHQHGRVRDVTNPTRHQKKHSTIQNDAVPTPPSSAAQRPRNPARAPKPVDEDLYKIPPHLLRSSKRVSFCLGYSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18310			unknown protein		Lus10042520 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	2.0	0.8804
					Lus10039781 [exp]	3.3	0.8879
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10026625 [exp]	6.2	0.8539
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	6.9	0.8411
					Lus10029449 [exp]	7.2	0.8500
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	8.1	0.7947
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	8.8	0.8264
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	11.0	0.8323
					Lus10038613 [exp]	13.5	0.8248
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	14.3	0.8413

Compare expression of checked genes

Lus10042520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.