Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08530 263 / 3e-88 unknown protein AT5G09995 103 / 2e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021985 [exp] 459 / 5e-165 AT1G08530 256 / 3e-85 unknown protein Lus10035858 [exp] 100 / 3e-25 AT5G09995 214 / 1e-69 unknown protein Lus10016816 [exp] 100 / 5e-25 AT5G09995 216 / 4e-70 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052700 [exp] 310 / 2e-106 AT1G08530 277 / 1e-93 unknown protein Potri.019G030400 [exp] 304 / 3e-104 AT1G08530 266 / 1e-89 unknown protein Potri.007G081800 [exp] 103 / 2e-26 AT5G09995 246 / 5e-82 unknown protein Potri.010G003700 [exp] 47 / 4e-06 AT5G09995 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042523 pacid=23181708 polypeptide=Lus10042523 locus=Lus10042523.g ID=Lus10042523.BGIv1.0 annot-version=v1.0 ATGATTCCCAGTAATCTCCGTCCCGTTTCCAGCTCTACTGTCACTGCTCTTGCTCTTCCCTCTAATTCAATCCTATTTCCCAGACTCTCGAATCTTCCCA ACCTCCGCCATTGCCTCAAACCTCCTCGCTTCATCGTCATCCGCGCTTCCAATCCCACAAAACGATCCCAATCGGTAGCCGGAGCTCAATCGCGCAACGG ATTGGACGAATTTTTTGGTGGTGAGGATGGGTCGGAGAGGGATTTGAAAGTGCAAGTGGGAAATGCCGTAGTTCCCTCGTTTATTACGCCATGGACGAAG CTCAGTTTGAACGATCAGGCCTCCTTCCTTCTGACCTTCGCCGCCTGCACGACATCCGTAGCCTTCACAAGTCTTGTGGTTGCTTCTATCCCTACACTTC ATGCAATGGGGAGGGCTGCAGTGTCACTGTCAAAGCTTGCAGATACAGCTCGTGAAGAACTTCCAAGTACAATGGCTGCGGTTCGGCTGTCAGGCATGGA GATCAGTGATCTTACACTTGAGTTGAGTGATCTCAGCCATGAAATAACTGAAGGGGTGAACAAATCTGCTAAAGCTGTGCAAGCAGCCAAAGCTGGAATT GGCCAGATTGGTACACTAGCTCACCAACATACTATCTCGATGATTGAAGAACGAGCCAATCTCCCCGAAATCTCCCTGCAACCTGTTGTGGTCGGAGCAG CAAAGAAGACTTCTCGTGCAGTTGGCCGGGCGACCAAGAGCTTGCTGAATATGATCTCTGGAGGTGAAAGGGAGAATGAAACTGGAGTTCAGAGGGTAGA AAAATAA
AA sequence Show only first row Show all	>Lus10042523 pacid=23181708 polypeptide=Lus10042523 locus=Lus10042523.g ID=Lus10042523.BGIv1.0 annot-version=v1.0 MIPSNLRPVSSSTVTALALPSNSILFPRLSNLPNLRHCLKPPRFIVIRASNPTKRSQSVAGAQSRNGLDEFFGGEDGSERDLKVQVGNAVVPSFITPWTK LSLNDQASFLLTFAACTTSVAFTSLVVASIPTLHAMGRAAVSLSKLADTAREELPSTMAAVRLSGMEISDLTLELSDLSHEITEGVNKSAKAVQAAKAGI GQIGTLAHQHTISMIEERANLPEISLQPVVVGAAKKTSRAVGRATKSLLNMISGGERENETGVQRVEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08530			unknown protein		Lus10042523 [exp]	0	1
AT1G78620			Protein of unknown function DU...		Lus10013691 [exp]	1.0	0.8008
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	23.0	0.7672
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007955 [exp]	59.1	0.7049
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	59.6	0.7094
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	72.0	0.6655
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	77.2	0.6911
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009180 [exp]	88.8	0.7081
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10002055 [exp]	94.3	0.7055
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Lus10007937 [exp]	141.2	0.6614
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	143.3	0.6763

Compare expression of checked genes

Lus10042523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.