Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18280 670 / 0 ATAPY2 apyrase 2 (.1.2) AT3G04080 608 / 0 ATAPY1 apyrase 1 (.1) AT3G04090 191 / 9e-56 SIP1A, SIP1;1 small and basic intrinsic protein 1A (.1) AT5G18290 169 / 9e-48 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) AT1G14240 149 / 3e-38 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT2G02970 144 / 3e-36 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 139 / 9e-35 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 135 / 3e-33 GDA1/CD39 nucleoside phosphatase family protein (.1) AT4G19180 72 / 1e-12 GDA1/CD39 nucleoside phosphatase family protein (.1) AT3G56950 65 / 2e-11 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006546 [exp] 781 / 0 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 660 / 0 AT5G18280 558 / 0.0 apyrase 2 (.1.2) Lus10021989 [exp] 362 / 2e-108 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035281 [exp] 159 / 9e-44 AT3G04090 176 / 9e-55 small and basic intrinsic protein 1A (.1) Lus10030046 [exp] 154 / 3e-42 AT3G04090 172 / 2e-53 small and basic intrinsic protein 1A (.1) Lus10030470 [exp] 142 / 1e-35 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 135 / 3e-33 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 100 / 5e-22 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 100 / 6e-22 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053500 [exp] 662 / 0 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 654 / 0 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.019G031200 [exp] 480 / 6e-163 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053700 [exp] 309 / 5e-99 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.019G030900 [exp] 253 / 1e-78 AT3G04090 236 / 3e-78 small and basic intrinsic protein 1A (.1) Potri.013G053400 [exp] 246 / 6e-76 AT3G04090 224 / 6e-74 small and basic intrinsic protein 1A (.1) Potri.014G154400 [exp] 182 / 3e-52 AT5G18290 183 / 2e-57 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.002G227500 [exp] 176 / 4e-50 AT5G18290 165 / 2e-50 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.008G086400 [exp] 143 / 7e-36 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 131 / 7e-32 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10042528 pacid=23181779 polypeptide=Lus10042528 locus=Lus10042528.g ID=Lus10042528.BGIv1.0 annot-version=v1.0 ATGGGTGCGGTGAAGTCCGCGATCGGAGATGTCGTCCTCACTTCCTCCTGGATGTTCGTTTCCTCCATGTTTGGATTGTTTACGAGCCTCTTAGCAACTG CGCTCGGCGTTGAGAAGATGTACTGGCCCTCTATTTTCATTACCACTCTTCTTATTTGTGTCTTCGTGTTCCTCTTCACTTTTATCGCCGACTTTCTCGG CGGTGCTAGTTTCAATCCCGCCGGCAACGTCTCCTTCTACGCGGCTGGGTTTGGCGGCGACACTCTCTTTTCCCTCGCTATCAGGTTTCCTGCTCAGGCT GCAGGTGCTGTAGCCGGTGTATTAGCTGCAATGGAGGTGATGCCAGTGCAGTACAAGCACATGCTTGGAGGTCCAAGCTTGAAAGTTGACGTGCACACTG GTGCTATTGCGGAGGGTGTGCTGACCTTTATAATTAGCTTTGCTGTTCTTGTCATTATCATCAAGGGTCCTCGGAACACATTAGCACAGGCGTGGTTGCT TGCTGTTACAACTGTCACGATCGTCATTGCTGGATCGGGTTATACTGGACCATCCATGAATCCTGCCAATGTGAGTATTCTTCAGACTCTGGGCATTCGG ATGGGCGTATGTAAACAAATGGCACAACACATGGGAGCACTTCTACGTATACTGGATATGTCCTTCTGTGGGGGCGATATTGGCTGCGTGGATGTTCCGA CTGGTGTTCCCTCCTCCGCCGCAACCAAAAAAGAAGAAGGCCTGAAGAGAGAGGAGCAAAAACGAACAGGGCAGATAATGGTGGTGGGTAGTTATATTAG TCCAGGTAGGGTGTGGTTCAACGTAGCTAAAACGAGGGGAGGAGAGCTGGATCCGTCTCAGGAACCAGCGCCGTCCTTGAAGGCACCAGCCACCACCTCC GCCACTACTGGTAACGGTCAGATCCGGTACCGTACTCCTTCCTCCGCCGAGCTCCTGGAGGCCGGAGCCACTTCCCCGACTAATTCCGACCATCCCGTCC CTCACGATAGGATGAACAAGCGCAGCTCTATCCGCCACGAGAATTTCTCCGATAAGATGCATAGGTACCGGAGTGTGCTGCTGGTAATCTCGATCCCTTT GCTTCTGATCGGATTCGTGTTGTTCGTGATGCCGGGCGGGGAAGAGTACGAGATCGCTAACAGGAAAGTGTCCCCAACTCTGAAGTACTCTAAGAACTAC GCCGTTATTTTCGACGCTGGCAGTTCTGGGAGTAGAGTTCATGTTTTCTGTTTCGATCCGAATATGGATCTCGTTCCAATGGGAAAAGATCTTGAGCTGT TCGCCCAGCTTAAGCCTGGGTTGAGCTTCTATGCTAAGGACGCGCGAGCAGCAGCGGAGTCTCTCACCTCTCTTCTCGATAAGGCAGAAGGTATTGTGCC GAAGGAATTGCGATCGAAGACTCCAGTTAGAGTTGGGGCAACTGCAGGGTTGAGGACATTGGAAGGTGATGCATCAGATCGAATTTTGCAATCGGTCAGG GATCTTCTGAAAGATCGAAGCACCTTGAAATATGATGCGAATTCAGTCACTGTCTTGGATGGTTCGCAAGAAGGTTCTTATCAGTGGGTCACAATAAATT ATCTCTTAGGAAAGTTAGGAAGGTCGTATGCCAGTACTGTTGGGGTAGTTGATCTTGGTGGAGGATCAGTTCAAATGGCATATGCCATATCTGAAGCAGA TGCAGCCAAGTCTCCAAAGTTGACTGGTGGAGAGGATACTTATGTACACAAAATGCTTCTGAAGGGAACAACATATTACCTCTATGTTCACAGCTATTTG CACTATGGATTATTAGCTGCTAGAGCAGAGATGTTGAAGGTTTCTGATGGGTCTTCCAATCCATGCATTTTGGCTGGTTATGATGGTACTTACAAGTACG GGGGAGAAGATTTCAACGCAGCTGCCTCTCCTAGCGGTTCTAGCTTGGAAGAGTGCAGAAGGGTAGCTGCTAGGGCACTGAAAGTTAATGAGACAACGTG TGAGCATATGAAATGCACCTTTGGTGGAATATGGAATGGTGGGGGTGGAGATGGTCGAAAGAACCTATTCGTTGCTTCATTTTTCTTTGATAGGGCTGCT GAGGCAGGTTTCATTAATCCCAAATTGCCAGTTGCAAAAGTCCGTCCATCTGATTTCGAGGAAGCAGCTAGACGCGCTTGTGAAACTAAGCTTGAAGCTG CAAGGTCTACTTATGCAGCTGTAGAAGAGGGGAACCTGCCATATCTGTGCATGGATCTTGTCTACCAATACACCTTGCTCGTGGATGGCTTTGGTCTCAG TCCGTGGCAAGACATCACCTTGGTGAAGAAGGTTCAATACGGAAATTCCCTTGTTGAAGCGGCATGGCCATTAGGTAGCGCCATCGAGGCTGTCTCGGCG CTGTAA
AA sequence Show only first row Show all	>Lus10042528 pacid=23181779 polypeptide=Lus10042528 locus=Lus10042528.g ID=Lus10042528.BGIv1.0 annot-version=v1.0 MGAVKSAIGDVVLTSSWMFVSSMFGLFTSLLATALGVEKMYWPSIFITTLLICVFVFLFTFIADFLGGASFNPAGNVSFYAAGFGGDTLFSLAIRFPAQA AGAVAGVLAAMEVMPVQYKHMLGGPSLKVDVHTGAIAEGVLTFIISFAVLVIIIKGPRNTLAQAWLLAVTTVTIVIAGSGYTGPSMNPANVSILQTLGIR MGVCKQMAQHMGALLRILDMSFCGGDIGCVDVPTGVPSSAATKKEEGLKREEQKRTGQIMVVGSYISPGRVWFNVAKTRGGELDPSQEPAPSLKAPATTS ATTGNGQIRYRTPSSAELLEAGATSPTNSDHPVPHDRMNKRSSIRHENFSDKMHRYRSVLLVISIPLLLIGFVLFVMPGGEEYEIANRKVSPTLKYSKNY AVIFDAGSSGSRVHVFCFDPNMDLVPMGKDLELFAQLKPGLSFYAKDARAAAESLTSLLDKAEGIVPKELRSKTPVRVGATAGLRTLEGDASDRILQSVR DLLKDRSTLKYDANSVTVLDGSQEGSYQWVTINYLLGKLGRSYASTVGVVDLGGGSVQMAYAISEADAAKSPKLTGGEDTYVHKMLLKGTTYYLYVHSYL HYGLLAARAEMLKVSDGSSNPCILAGYDGTYKYGGEDFNAAASPSGSSLEECRRVAARALKVNETTCEHMKCTFGGIWNGGGGDGRKNLFVASFFFDRAA EAGFINPKLPVAKVRPSDFEEAARRACETKLEAARSTYAAVEEGNLPYLCMDLVYQYTLLVDGFGLSPWQDITLVKKVQYGNSLVEAAWPLGSAIEAVSA L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	0	1
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	1.4	0.9382
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	2.4	0.9300
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	4.2	0.9169
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	5.9	0.9011
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	8.0	0.9132
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	8.1	0.8858
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	8.5	0.8991
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	11.0	0.8849
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	11.4	0.9077
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	11.8	0.8947

Compare expression of checked genes

Lus10042528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.