Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65560 495 / 2e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 467 / 3e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 316 / 2e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 308 / 3e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 313 / 4e-90 PGR3 proton gradient regulation 3 (.1) AT5G39710 293 / 1e-85 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 281 / 7e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 288 / 3e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 280 / 6e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 277 / 2e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021989 [exp] 1745 / 0 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 546 / 1e-178 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 543 / 2e-177 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 315 / 3e-91 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10008185 [exp] 311 / 2e-90 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 301 / 2e-87 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 299 / 3e-87 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027916 [exp] 295 / 4e-86 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 293 / 2e-85 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124900 [exp] 524 / 2e-170 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 338 / 5e-103 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 342 / 4e-101 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 322 / 2e-94 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 317 / 1e-93 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G236800 [exp] 318 / 3e-93 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 303 / 9e-91 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G264800 [exp] 314 / 2e-90 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.007G123600 [exp] 311 / 3e-90 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 304 / 1e-89 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042529 pacid=23182034 polypeptide=Lus10042529 locus=Lus10042529.g ID=Lus10042529.BGIv1.0 annot-version=v1.0 ATGTTGAGGCCTCTTTCAAAATTTTATCTTCCCAACTCCACTCCTCGTCGGTTCTTCTCCTTCTCTTCCGAATCTAGCTACCACCAAATCACATCCAAAG TTCTCCACTTGCTGTCCAGCGACAGTCGGTGGCCGAGTAACCCGGAGCTGAATAGTTTGGCTCATCGTCTCCGGCCTGCTCACGTGGAGCAAATAATCAG AACTCACAACAGCACAGATGTTGTAACAAGGTTTTTTTTCTGGATCTCTAAGAAGCATTTTTACAAACATGATGTAGGCAGTAGTTACGTTCCGATGCTG GATAGACTGGTAAGGGACCGTTGGTTCATTAAGGCCGATGAAGTGAGGATTCTGATGATAAGAGCTTGTAGGAACGAGGGCGAGCTTAAGAGGGTGATTG AATATTTGAACAGCATTAGAGGAAGTGCTGGGTTTGAGTTCAGTTTTCATACTTTTAATGCTCTTTTGATTCAGCTGGGGAAGTTTGGTATGGTTAGTGT AGCACAAAGTGTGTACAATCAGGTTTTGAGCAGTGGGATGACCCCGAGTTTGGTGACATTGAATTTGATGATTAACGTGCTTTGTAAGAAAGGAAAAGTT CAGGAGGCTGAGTTGGTGTTCAGCAAGATTTCTGAGCTCGATATGTCTCCTGATGTGTTCACCTATACTTCCCTGATCCTTGGACATTGTAGGAACATGA ATCTTGACAAAGCCTTTGAGGTTTTCGATACGATGATTAAGGAAGGGTGTGATCCTAATTCGGTGACTTATTCGACTCTGATCAATGGATTGTGCAAGGA GGAGAGAATAGACGAGGCAATGGATATGCTTGAGGAGATGAATGAGAAAAATATTGCATCTTCTGTCCACACTTTTACTGTGCCGATAAGTTGTTTATGT GAATTCGGGCGCGTGGATGAAGCGGTTGGGATTCTTAAAATCATGAAGGAAAGGGGTTGTTACCCGAATGTGCATAACTACACTGCTCTTATCGGCGGGT TGTTTCGGACTGGCAGAATGAAGGTTGCGATCGGACTCTATCACAAAATGTTGAGAGACGGTATAGCTCCCAGTGTTATTACATACAATTTGTTGATCAA TGAACTGAGTGTGAAAGATAGGTATGTCGTCGCTTTTGATTTCTTTGCCTGGATGGAGAGAAATGGTTCCATGGCTAATTCGCAGACCTATAATGCAATA ATAAAGGGGTTGTGTGTCATGGACGATGTTGAGAAGTCTATGGAAATTTTTTGCAAAATGTTGAAGGATGGCCCCCAACCAACTGTTGTGACGTATAACA CCCTCATTCTTGGGAACCTTAAGTTGGGAAACCACGATAATGCATTGAGATTACTTGATATGATGAAGGACGGTGGATGCGAACCTGATTTATGGACTTA TTCGGAGCTCATATCGGGGTTTTGTAAAGGAGGCAAATTGGATTCAGCTGCTTCTCTTTTTAATGAGATGATTAAAAGGGGGATTCAGCCTAGTCAGTGG ACTTATACAGCCCTGATTGATGGGTACTGCAAAGAGGGGAAACTGGATGTTGCTTTGTCATTGCTCAAAAGGATGAGAGAAATCAGTTGCTACCCGAGTA TTGAAACTTATAATGCCATTATAAGTGGGTTTGCCAAGGATAATCAGTTTTCCGAGGCAGAGCGACTATGTGCGGCTATGTCGGGGGAAGGGTTGGTACC AAATGTGATCACTTATACATCTTTGATTTATGGGTTATGCAAGAACAGTGCAGTCAATATGGCATTCAAAGTTTTCAATGAAATGGAGCAGCAACATGGT TGCTTTCCAAATGTACAAACGTATACTTCACTCATCTATGGCTTGTGTCAAGAAGGCAAAGCTGACGAGGCAGAAAGATTGCTCGAAAAAATGGAAAGAA AGGGAATTTCTCCTGACGAGGTTACCTTCACTGCTCTTATTGATGGTTTTGTGATGCTTGGTAGATTGGACGATGCATTTTTATTGTATCAACGAATGGT CCACATGGGTTGCAAGCCAAACTTCAGAACTTACTCTGTGCTACTAAAAGGACTAGAAAAACAAGCACAATTGCTTGCAGAAAGAGCCGTGGCTCAAAAT GAGACTTCCCGTGTGAGTGAATCGGATGATAAGGTTACTAGTTTTGAATTGATCTGTCATCTCCTATCTAGATTATCAGAACCGACAGTAGATGTGTACA GTATTCTAGTTAGTGGCTTGTGTAAGGATGGAAGATCACATGAGGCAAATCAATTGGTAGAATATATGATAGGAAGTGGCTTGTCACCTACTATGGAGAT GCACGTCTCCCTGCTATTTGCTCACTGTAAGAATTTGGAAGTGGGCCCTGCTTTGCAAATTTTTAACCTGGTAAAGCTTGAAGGCTTCAAGCCTAATCTC TCTGTCTATAAAGCTCTTATTCATGCTCTATGCATGAAGAATCAGTTGGAAGAAGCTGAAACTTTATTCAAGCTGTTATTAGAAGAACAAAGGAGCGGCG ATCTGATTGTTTGGACAGTGCTGATTGACGGGCTGCTGAAAGGTGGAAAATCAGACGTGTGCATGAAGTTTCTACAACTGATGGAAGCTAGGAATTTCTC ACTTTTCTTACATACTTATGTGTCCTTGGCAAGAGAACTTTCTAAGGCAGGTCAATTAATAGAGATTGATAGAATGTGCAGTAAGCTGAGCAGCTTGAAG GAAAAGCAGCATCCCGGCATTGGAACAACTGTTGCAGATAGGAAGGGATCTTTCGAAAATTTTCTGCCATGGCAGGCAGCCGGGTTATGCTCATTCTCTA CGCGAGTATCATGCTATGATCTCATCCTCGGCAAGATGAGGAAGTTCGATACAGCATGGGCGGTAGTCGATGAGATGAGAGGTGTCAAGACTGGAGGAGT GTCCCTTGTTACTCCGCAAACTATGATGATCATGATAAGAAGATATGCGGCAGCTCATGATGTTGGTCAAGCCATCAATACGTTTTATGCATACAAGCGC TTTAAACTCAAAGTGGGAATTGAAGACTTCCATGGTCTTTTGTCAGCTCTGTCTCGTTACAAGAACGTGCAAGATGCTGAACAGTTAATGTACTGCGACA AAGAGATCTTCCCGTTAAACACCAAGAGTTATAACATTGTGCTGAATGGATGGTCCAATGTGATTGGTAGCCCTCGATAA
AA sequence Show only first row Show all	>Lus10042529 pacid=23182034 polypeptide=Lus10042529 locus=Lus10042529.g ID=Lus10042529.BGIv1.0 annot-version=v1.0 MLRPLSKFYLPNSTPRRFFSFSSESSYHQITSKVLHLLSSDSRWPSNPELNSLAHRLRPAHVEQIIRTHNSTDVVTRFFFWISKKHFYKHDVGSSYVPML DRLVRDRWFIKADEVRILMIRACRNEGELKRVIEYLNSIRGSAGFEFSFHTFNALLIQLGKFGMVSVAQSVYNQVLSSGMTPSLVTLNLMINVLCKKGKV QEAELVFSKISELDMSPDVFTYTSLILGHCRNMNLDKAFEVFDTMIKEGCDPNSVTYSTLINGLCKEERIDEAMDMLEEMNEKNIASSVHTFTVPISCLC EFGRVDEAVGILKIMKERGCYPNVHNYTALIGGLFRTGRMKVAIGLYHKMLRDGIAPSVITYNLLINELSVKDRYVVAFDFFAWMERNGSMANSQTYNAI IKGLCVMDDVEKSMEIFCKMLKDGPQPTVVTYNTLILGNLKLGNHDNALRLLDMMKDGGCEPDLWTYSELISGFCKGGKLDSAASLFNEMIKRGIQPSQW TYTALIDGYCKEGKLDVALSLLKRMREISCYPSIETYNAIISGFAKDNQFSEAERLCAAMSGEGLVPNVITYTSLIYGLCKNSAVNMAFKVFNEMEQQHG CFPNVQTYTSLIYGLCQEGKADEAERLLEKMERKGISPDEVTFTALIDGFVMLGRLDDAFLLYQRMVHMGCKPNFRTYSVLLKGLEKQAQLLAERAVAQN ETSRVSESDDKVTSFELICHLLSRLSEPTVDVYSILVSGLCKDGRSHEANQLVEYMIGSGLSPTMEMHVSLLFAHCKNLEVGPALQIFNLVKLEGFKPNL SVYKALIHALCMKNQLEEAETLFKLLLEEQRSGDLIVWTVLIDGLLKGGKSDVCMKFLQLMEARNFSLFLHTYVSLARELSKAGQLIEIDRMCSKLSSLK EKQHPGIGTTVADRKGSFENFLPWQAAGLCSFSTRVSCYDLILGKMRKFDTAWAVVDEMRGVKTGGVSLVTPQTMMIMIRRYAAAHDVGQAINTFYAYKR FKLKVGIEDFHGLLSALSRYKNVQDAEQLMYCDKEIFPLNTKSYNIVLNGWSNVIGSPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	0	1
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	1.4	0.7738
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	5.5	0.7423
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	8.9	0.7021
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	10.1	0.7360
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10039221 [exp]	10.5	0.6895
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	15.2	0.6655
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	20.8	0.6865
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	27.3	0.7271
AT3G04160			unknown protein		Lus10042519 [exp]	29.7	0.6748
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	30.3	0.6677

Compare expression of checked genes

Lus10042529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.