Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15010 182 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80880 111 / 3e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 89 / 3e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 83 / 3e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 83 / 4e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 82 / 7e-19 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 82 / 8e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 81 / 1e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02420 81 / 1e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 81 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021991 [exp] 266 / 6e-87 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041669 [exp] 109 / 2e-28 AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 87 / 2e-20 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014247 [exp] 87 / 2e-20 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003446 [exp] 83 / 3e-20 AT1G62930 137 / 2e-37 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018567 [exp] 86 / 4e-20 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003433 [exp] 86 / 5e-20 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10039799 [exp] 84 / 1e-19 AT1G03560 473 / 5e-164 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10025533 [exp] 84 / 1e-19 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053600 [exp] 193 / 3e-59 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G043500 [exp] 113 / 6e-30 AT1G80880 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 89 / 2e-21 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 87 / 9e-21 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G008900 [exp] 85 / 6e-20 AT2G32630 612 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G014100 [exp] 85 / 6e-20 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 85 / 8e-20 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 85 / 9e-20 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G124900 [exp] 84 / 2e-19 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 84 / 2e-19 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042530 pacid=23181682 polypeptide=Lus10042530 locus=Lus10042530.g ID=Lus10042530.BGIv1.0 annot-version=v1.0 ATGTCCAAAAGAGGAATCCTTTACGATGTTGTTTCATACTCGAGTATCTTATCTTGTTATTCAAAGGCGGGGAACATTTACAAGGTTCTGAAAATGTACG ATAGGATGAAAGAAATGAACATCGAACCAGATAGGAAAGTGCATAATGCTGTTATTCAGGCTCTTGCAAAGGTCAGGCATGCAAAGGAAGCTATTGATCT CATGAAGACAATGGATGAGAAGGGTGTTTCGCTCAATGCTGTGACGTATAATTCATTGATTAAGCCCTTGTGCAAGGCACAAAAAATAGACGAAGCGAGA ATTGTCTTTGATGAGATGTTTCAACATGGGCTTCCTCCAACAGTACAGACATATCATGCTTTCTTGCGCTACCTCCGGACCGCTGAGGGAGCATTTGAAA AATTGGAAAACATGACAAAGGTAGGATACCTACTAACGAGACCTACATGA
AA sequence Show only first row Show all	>Lus10042530 pacid=23181682 polypeptide=Lus10042530 locus=Lus10042530.g ID=Lus10042530.BGIv1.0 annot-version=v1.0 MSKRGILYDVVSYSSILSCYSKAGNIYKVLKMYDRMKEMNIEPDRKVHNAVIQALAKVRHAKEAIDLMKTMDEKGVSLNAVTYNSLIKPLCKAQKIDEAR IVFDEMFQHGLPPTVQTYHAFLRYLRTAEGAFEKLENMTKVGYLLTRPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10042530 [exp]	0	1
AT2G26210			Ankyrin repeat family protein ...		Lus10034882 [exp]	8.3	0.7501
					Lus10022574 [exp]	11.4	0.6991
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017820 [exp]	23.7	0.7035
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	47.1	0.6428
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035404 [exp]	64.1	0.6771
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007545 [exp]	76.0	0.6103
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003865 [exp]	113.4	0.6416
					Lus10015577 [exp]	144.9	0.5963
					Lus10019733 [exp]	150.3	0.6173
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	171.2	0.6143

Compare expression of checked genes

Lus10042530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.