Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 226 / 7e-70 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 145 / 4e-40 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 94 / 9e-21 RING/U-box superfamily protein (.1) AT5G13250 81 / 1e-16 RING finger protein (.1) AT1G28080 49 / 2e-06 RING finger protein (.1) AT1G03770 45 / 8e-05 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT5G44280 42 / 0.0009 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021993 [exp] 634 / 0 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 254 / 2e-80 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 251 / 3e-79 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10006558 [exp] 233 / 3e-73 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10003261 [exp] 0 / 1 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054400 [exp] 320 / 4e-106 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 318 / 1e-105 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 268 / 4e-86 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 250 / 4e-79 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 237 / 8e-74 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 134 / 2e-35 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 124 / 2e-32 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.001G062700 [exp] 77 / 2e-15 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 76 / 7e-15 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.004G137200 [exp] 73 / 3e-14 AT5G13250 92 / 9e-21 RING finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042532 pacid=23181750 polypeptide=Lus10042532 locus=Lus10042532.g ID=Lus10042532.BGIv1.0 annot-version=v1.0 ATGGCGGAGAACGATGTGATGAAAGTGAATATGAAGGCATTAAAGGCATGCATGACATGCCGTCTCTGCAATAACCTCTTCCGTCAACCTACCGCCATCT CTCTTTGCCTCCATACATTCTGCAGAAAGTGCATATATAACAGGTTATCAGATGGTGGAGTTGGTACCTGCCCTGTATGTGATATTGACCTTGGTTGTAA CCCACTGGACAAACTCAGGCGGGATTACAACCTGGAAGATATAAGAGCTAAGATATTTCCTCTGAAGAGAAGAAAAGTTGTTAAGCCTTCTTCTGAGATT GTCACTTCAATTGCAAAGCCAGCAAAGAGAAAAGAAATATCATTATCATCTTTGCCTGTTCCTATTCCTACTTTCACACAACGTAAACAAGTTGGCGTGA CTGCAAGTCAACCCAAACCTGGAAAAAGCAAATCTCCACATGCTAGCTCAAGCCCTCCTAAGTCTCTAAGTGAAATTTCACTGAGAAAAATGCAGGGTTC TTCGGTTGTTGAACCTTCGAACGAGGATCGATCTAATGGAAGTGGGGACGACGATTGTGTAATAATAGCTGAACGGAAAAAAGCTGATGTATGGACATTA TTGAACAGTCTTGTTGAAGGTTCTAGTGATAGAACTAAGTCATCAAAGCCTAACTCACAAGTTCAATCTCTTGCCGAATCGGAGCCTTCAAATGCCGTTG AACCGAAGTCCACAGAAGCAGAACCAAAAGTGGCGTCTGAAGCTGTTCAAGGCAGCAAAACACTCGTCGTCGAAAACAAAAGTAAAGAACATGATCATGA AATCAAAGTTTGCGATGCTGAAAAGAACTGCATAAATCCAATGAGCAATGGCGGTATAAGGAACTGCTCGGTTTGGTTGTCATTGGTCGCTAATGATGAC AAGAATGGAGATGCTTCACTTCCCCAGATTCCTGGTTGTTACTTGAGGATCAAGGACAGTAAAACGATGGTTTCATCCATCCAGAAGTACATTGTGAAGA AACTTGAACTTAGTAATGAGACTGAGGTGGAAATAAAGTGCAGGGGAGAACCAGTGGTTCCAACACTGCAACTCCAGAACTTGGTAGATTTATGGTTGAG GAATGCAACAACCAAGCAAGTGGCGGCGCCCCTTGTGGGTTCTTCGGCAAAAGAGTTCGTCATGGTCTTGTCTTACTGTCGTAAAGTTCAAGCATCTTGA
AA sequence Show only first row Show all	>Lus10042532 pacid=23181750 polypeptide=Lus10042532 locus=Lus10042532.g ID=Lus10042532.BGIv1.0 annot-version=v1.0 MAENDVMKVNMKALKACMTCRLCNNLFRQPTAISLCLHTFCRKCIYNRLSDGGVGTCPVCDIDLGCNPLDKLRRDYNLEDIRAKIFPLKRRKVVKPSSEI VTSIAKPAKRKEISLSSLPVPIPTFTQRKQVGVTASQPKPGKSKSPHASSSPPKSLSEISLRKMQGSSVVEPSNEDRSNGSGDDDCVIIAERKKADVWTL LNSLVEGSSDRTKSSKPNSQVQSLAESEPSNAVEPKSTEAEPKVASEAVQGSKTLVVENKSKEHDHEIKVCDAEKNCINPMSNGGIRNCSVWLSLVANDD KNGDASLPQIPGCYLRIKDSKTMVSSIQKYIVKKLELSNETEVEIKCRGEPVVPTLQLQNLVDLWLRNATTKQVAAPLVGSSAKEFVMVLSYCRKVQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	0	1
					Lus10000984 [exp]	2.4	1.0000
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	3.5	1.0000
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	4.2	1.0000
					Lus10017835 [exp]	4.9	1.0000
AT5G62440			Protein of unknown function (D...		Lus10022837 [exp]	5.3	0.9681
					Lus10040014 [exp]	5.5	1.0000
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	6.0	1.0000
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	7.5	1.0000
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	7.5	1.0000
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10021239 [exp]	7.7	0.9405

Compare expression of checked genes

Lus10042532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.