Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72030 176 / 3e-54 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT4G28030 48 / 3e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT2G39000 42 / 0.0002 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021995 [exp] 462 / 4e-166 AT1G72030 181 / 4e-56 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10019975 [exp] 47 / 7e-06 AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10023517 [exp] 43 / 0.0002 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10040401 [exp] 43 / 0.0002 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10030837 [exp] 42 / 0.0004 AT1G24040 289 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10037996 [exp] 41 / 0.0006 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 41 / 0.0006 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054600 [exp] 259 / 3e-86 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G176500 [exp] 45 / 2e-05 AT4G28030 284 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.010G222900 [exp] 42 / 0.0002 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.008G039300 [exp] 41 / 0.0006 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10042534 pacid=23181776 polypeptide=Lus10042534 locus=Lus10042534.g ID=Lus10042534.BGIv1.0 annot-version=v1.0 ATGGCTCAACCTCTGCCTTGCTTTCCCTCTACATCCATCTCTTCCCAAACCTCTTCCTCTTTATCAAAACCTTTCACACTCGATCTTCACATCAGAAGGA GACATGACGTTTCCACAACTGCACGGATTCATCACAGCAAGAAAGGAAATGCTGTTCTGTGTTGCAGTGCCAGCAGCACCACAACCACTGGTTCTACACC ACCATCAGTAAAAGAAGACGCAACCTCTTTACAAGTTTGGGAAGTACCAAGTATCGGAAGAACAACAGAGCAGCAATTCGAAAACTTGACGACCCAGTTT GGATGGAGAGTTAGGCGGCTAGTTAATAATCCGACTGAGACCAAGGAAGTTGCTCAGGTTCAAGCTGAAGCATTCCACACACCAGTAGCCCTCTTTGATT TCCTCTTCTTTGAGTTCTTCAAGGCCGAAGTGCTTTCAGGACTCCTTTACAAGCTTCGGAATTCGACTCCAGACAGATATGCATGTCTGGTGGCTGAGCC AGCCGATGATTCTTCAACATCTCCAACCAAGCTCATCGGAGTGGCCGATGCCACAGCCGCTAGAGATGCAGAAGTACTCAAGTATCTCGTTGGAGTTCAA GAGTACCTCTACATTTCAGGGATAGCTGTCTTGGCCAGTTTCAGGAGACGAAAAGTTGGGAGTGTGCTGCTAACAGCATGCGACAATGTGGCGAGACTGT GGGGGTTCGAGTATCTTGCTCTCCAGGCATATGCAGATGATATGGGAGCTAGAGCGCTGTATGCCAAAGCAGGTTACAGAGTGGCTTCAAGTGATCCACA GTGGTTTGCTTTGATAGGAAGACGACCCCGAGTTCTAATGATCAAACGCCTCTAG
AA sequence Show only first row Show all	>Lus10042534 pacid=23181776 polypeptide=Lus10042534 locus=Lus10042534.g ID=Lus10042534.BGIv1.0 annot-version=v1.0 MAQPLPCFPSTSISSQTSSSLSKPFTLDLHIRRRHDVSTTARIHHSKKGNAVLCCSASSTTTTGSTPPSVKEDATSLQVWEVPSIGRTTEQQFENLTTQF GWRVRRLVNNPTETKEVAQVQAEAFHTPVALFDFLFFEFFKAEVLSGLLYKLRNSTPDRYACLVAEPADDSSTSPTKLIGVADATAARDAEVLKYLVGVQ EYLYISGIAVLASFRRRKVGSVLLTACDNVARLWGFEYLALQAYADDMGARALYAKAGYRVASSDPQWFALIGRRPRVLMIKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10042534 [exp]	0	1
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	1.0	0.9870
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	2.8	0.9361
AT1G44000			unknown protein		Lus10029738 [exp]	2.8	0.9178
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10014015 [exp]	5.7	0.8969
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	7.7	0.9173
AT3G15760			unknown protein		Lus10005715 [exp]	7.7	0.8936
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	9.2	0.8860
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	10.9	0.9100
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	12.7	0.9134
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	13.0	0.9042

Compare expression of checked genes

Lus10042534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.