Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08770 128 / 5e-37 PRA1.E prenylated RAB acceptor 1.E (.1) AT1G55190 118 / 2e-33 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 113 / 2e-31 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT5G01640 113 / 4e-31 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT2G38360 112 / 7e-31 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT2G40380 112 / 1e-30 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT3G56110 106 / 1e-28 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G07110 104 / 1e-27 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT5G05380 104 / 1e-27 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT3G13720 100 / 1e-26 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021996 [exp] 296 / 8e-103 AT1G08770 162 / 3e-50 prenylated RAB acceptor 1.E (.1) Lus10014747 [exp] 137 / 1e-40 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10033859 [exp] 136 / 3e-40 AT1G55190 149 / 1e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10005088 [exp] 126 / 3e-36 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10034363 [exp] 126 / 3e-36 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10026404 [exp] 126 / 4e-36 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 127 / 5e-36 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10024861 [exp] 115 / 5e-32 AT1G08770 132 / 2e-38 prenylated RAB acceptor 1.E (.1) Lus10018774 [exp] 115 / 5e-32 AT1G08770 130 / 5e-38 prenylated RAB acceptor 1.E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054700 [exp] 196 / 2e-63 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.005G219100 [exp] 163 / 6e-51 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 155 / 1e-47 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 137 / 1e-40 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.006G104400 [exp] 104 / 2e-27 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.003G035200 [exp] 102 / 4e-27 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.016G126400 [exp] 100 / 4e-26 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 97 / 7e-25 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 97 / 7e-25 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.008G074000 [exp] 92 / 6e-23 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10042535 pacid=23181793 polypeptide=Lus10042535 locus=Lus10042535.g ID=Lus10042535.BGIv1.0 annot-version=v1.0 ATGCCGCCGGTGAAACCATCCGCCGGTTACGGCACAATCCCCACCACCACTACCACCACCACAACAACCACGTCCCCTTCCCAAACCTCCTTCACCTTCG TTTCACGCGCCGCTGCCACGACCCGCACCTTCGCCGCCACCGCGCGGCCATGGCGGGAAGTGTTCAGCCTCTCTTCCTTCTCTCGCCCGCACGACTACGG ACAGGCGATGTCCCGTATCAAGTCCAACGCCAACTACTTCCGGGTCAACTACACCATTGCCTTGCTATTCATCCTCTTCCTCAGCCTCCTGTGGCACCCT ATCTCCATGATCGTCTTCATCCTCGTCTTCGTCGCCTGGTTCTTCCTCTACTTCGGCCGCGGCGTCGAAGACGGGCCAGTGGTGGTGTTCGGGAGGAATG TCGACGACAGAATGCTGATCTCTGGATTAGGGTTGGTGACGGTGGTGGCGTTGGTGATGACGGATGTGGGAGTTAATGTGTTGGTGGCTCTAATGGTTGG GGTGGCGATTGTGGCAATTCACGGCGCTTTTAGAGGGGATGAGGATTTGTTTGTTGAGCAGGACGGTGGGATGCTTTCTGTTGTGGGAGAACATCAGCCT TTGAGAAGTGCAGCAGGGTATAATCGGATTTGA
AA sequence Show only first row Show all	>Lus10042535 pacid=23181793 polypeptide=Lus10042535 locus=Lus10042535.g ID=Lus10042535.BGIv1.0 annot-version=v1.0 MPPVKPSAGYGTIPTTTTTTTTTTSPSQTSFTFVSRAAATTRTFAATARPWREVFSLSSFSRPHDYGQAMSRIKSNANYFRVNYTIALLFILFLSLLWHP ISMIVFILVFVAWFFLYFGRGVEDGPVVVFGRNVDDRMLISGLGLVTVVALVMTDVGVNVLVALMVGVAIVAIHGAFRGDEDLFVEQDGGMLSVVGEHQP LRSAAGYNRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10042535 [exp]	0	1
AT1G72510			Protein of unknown function (D...		Lus10013156 [exp]	1.4	0.9109
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10021510 [exp]	6.5	0.8733
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10022611 [exp]	20.3	0.8470
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030585 [exp]	21.3	0.8939
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	27.7	0.8932
AT1G08440			Aluminium activated malate tra...		Lus10001849 [exp]	30.1	0.8923
AT2G22590			UDP-Glycosyltransferase superf...		Lus10025711 [exp]	36.5	0.8210
AT4G22600			unknown protein		Lus10028923 [exp]	36.6	0.8617
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	38.4	0.8892
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	38.5	0.8900

Compare expression of checked genes

Lus10042535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.