Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08790 131 / 2e-39 Protein of unknown function (DUF1685) (.1) AT3G04700 120 / 5e-35 Protein of unknown function (DUF1685) (.1) AT5G28690 118 / 2e-34 Protein of unknown function (DUF1685) (.1) AT3G04710 112 / 1e-29 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G43340 91 / 2e-23 Protein of unknown function (DUF1685) (.1) AT2G31560 88 / 2e-22 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT1G05870 88 / 2e-22 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT4G33985 82 / 9e-21 Protein of unknown function (DUF1685) (.1) AT2G15590 74 / 3e-17 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT3G50350 71 / 3e-16 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021997 [exp] 223 / 1e-76 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 192 / 6e-64 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10005536 [exp] 102 / 7e-29 AT5G28690 119 / 3e-35 Protein of unknown function (DUF1685) (.1) Lus10027022 [exp] 90 / 6e-23 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10025562 [exp] 90 / 8e-23 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10002400 [exp] 79 / 2e-19 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 72 / 9e-17 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 70 / 9e-16 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 70 / 1e-15 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055100 [exp] 167 / 1e-53 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.013G042400 [exp] 165 / 1e-52 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 98 / 2e-26 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.007G126700 [exp] 97 / 6e-26 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.007G043900 [exp] 95 / 3e-25 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.017G032800 [exp] 83 / 1e-20 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.009G101300 [exp] 76 / 3e-18 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.014G111000 [exp] 52 / 1e-08 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 43 / 2e-05 AT2G46940 111 / 4e-29 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10042536 pacid=23181742 polypeptide=Lus10042536 locus=Lus10042536.g ID=Lus10042536.BGIv1.0 annot-version=v1.0 ATGTGCGAGGCGGCGTGGGACTGGGCGGGGGAGCGGCGGCGGCGGCATTTCATGAGGCTGGAGCGGCGGAGGAGCGGGAGCATCCCGTCAGTTGACTCGT CGGAGGATTTGACAGACGAGGATTTGAACGAGCTGAAAGGATGCATAGAGCTAGGGTTTGGGTTCAACGAGGAAAAGGGGCAGCACCTGACGAATACATT TCCGGCTTTGGATCTGTACTTCGCCGTCAACCGCCAGCTGTCTCCTTCCCCTGTTTCCACGCCGGGTAGCCAATCGGGGGATTCTCAGTCGGCTGAGAGC CCCAACAGTGAACAAGATTGGAAGATTTGCAACCCAGGGGATCGTCCGGATCAAGTGAAGGCAAAGTTGAGGCATTGGGCTCAAGCTGTGGCCTGTTCTG TCATGCAATCTTACTAG
AA sequence Show only first row Show all	>Lus10042536 pacid=23181742 polypeptide=Lus10042536 locus=Lus10042536.g ID=Lus10042536.BGIv1.0 annot-version=v1.0 MCEAAWDWAGERRRRHFMRLERRRSGSIPSVDSSEDLTDEDLNELKGCIELGFGFNEEKGQHLTNTFPALDLYFAVNRQLSPSPVSTPGSQSGDSQSAES PNSEQDWKICNPGDRPDQVKAKLRHWAQAVACSVMQSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08790			Protein of unknown function (D...		Lus10042536 [exp]	0	1
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	2.2	0.9118
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	3.2	0.9118
					Lus10034545 [exp]	3.9	0.9118
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	4.5	0.9118
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	5.0	0.9118
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10037642 [exp]	5.1	0.7224
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10022732 [exp]	6.0	0.7961
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10042979 [exp]	7.3	0.7440
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	7.9	0.7600
AT1G17615			Disease resistance protein (TI...		Lus10018023 [exp]	8.1	0.7274

Compare expression of checked genes

Lus10042536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.