Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04690 912 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 887 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 734 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 597 / 0 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 578 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G61350 563 / 0 Protein kinase superfamily protein (.1) AT5G38990 556 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 555 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 553 / 0 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 541 / 0 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021998 [exp] 1515 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 810 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 721 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 669 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 567 / 0 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 566 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10042844 [exp] 551 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10003942 [exp] 551 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 548 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042500 [exp] 937 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 935 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 874 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 840 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 734 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 733 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 662 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 653 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 650 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 645 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10042537 pacid=23182064 polypeptide=Lus10042537 locus=Lus10042537.g ID=Lus10042537.BGIv1.0 annot-version=v1.0 ATGGCTCCAAAAAATCAGCGTTCTCTGTTTTTAACTCTTTCCCTTTTCTTGATTTTGTTCAACATCTCCGCCGCCGGGGAAAAACTCCCGCCCGCTTTGA TGCTGAGTTGCGGGTCGGAAGAACCCGGCACCGACGGAGAAGGCCGGAAATGGGAACTCGACGACAAGTATGTATCCGGAGAAAGTCTGAAAGCTAGAGC TCAACTACAAGACCCAGCGCTTCCTTCCGAGGTCCCATTTATGGACGCTCGGATTTTCCCTGCCGACGGAGGAGGTTACAAGCTCCCGATCCGACCCAAG ACCCGGTACTTCCTCCGGTTATATTTCTACCCGTCGGATTACCTCGATTACAACATCTCCACCTCTTTTTTTACCGTCACCGCCGGCGGATTCACCCTGC TTCAAAACTTCAGCACCATTCTCACAACTCAGGCGACCACCCAGGCTTACATTTTTAAAGAATACATTCTCACTCCGATAAATTCCGACGGTCTGGATCT CGCGATTAAACCGGAGAAATACGACGCCGCTTTCGGGTTTATCAACGGGATCGAGCTGGTCCCCATGCCTCCAGATATGTTCGGGAGCGTTCGGATGGTC GGGTTCGAAGAGACGGATATACAGACGGCGACAGCAACGATGGAGACTATGTACCGGCTGAACGTCGGCGGCGCGTTGGTGACGCCCACGAAAGATTCGG ACGGGATGGGAAGGACTTGGTACCAGGATTCGATGTATATGAGCGACACGGGAGTCGGAGTGACAAATGAGGCTCCGGAAAAGACCCGAATCAATTACGA TAAGATCCCTAATTACATCGCGCCGGCGGAGGTGTTCGAGACGAGCAGAAGTATGGGGGAGGATGGAGCAGTGAATCTCAAATACAATCTGACGTGGCGA TTCGCTGTGGATCAGAATTTCACCTACGTGGTTAGGTTTCAATTCTGCGACTGGCAAATTGGTTTGCCCAACCAGAAGCCTTTCAACATCTATATCAACA ACCAAACCGCTCAGGGAAACGAGTTTCCCATGGATCTCTTCGCCATGGCCGGTAAAGGAGTTCCCATATACAAGGACTTCGGTATGTACGTCGGTGCCAA ACCAGGCGAGGAACAAGGGACGGTCTTGGTCCAACTCCATCCATCCATCGTCTCCCACCCCGAGTACTTCGACGCTAGTCTAAACGGGCTGGAGATTTTC AAGATGCCCGCGTCGGGTAAGATTTTAGCGGGTCGGAACCCTGAAATGTCGAAGATGCTGGCGCATGACGTGGAGTTGGCGGCGGAGGCGAAGAGAAAGA AGAGCTTCCGGTCCCACAATGTCGCGATAGTCGGAGCGGCTTCCGGCGGGGCCGCGGGTTTCTGCTTGGTCGCGGTGGTCTTTGTTGTCTGCCGCAAAAA GAAGAACGGAACCCATGGAGGCCCACACGGTTCCAGCTGGCTACCCGTCCATGGAAGCTCTCGGAGCAGTACTAACAATAGCTCCGGCGGTAGCAATCAC TTGGCATCTCTGGCGCAAGGACTCTGTCGACGGTTCTCTTTGCCGGAGATCAAAAGAGCGACCCACAACTTCCACGACTCCAACGAGATTGGAGTTGGAG GGTTCGGGAAAGTCTACAAGGGCTCGATCGACAATGGGTCGCTCCAGGTGGCAATCAAGCGGTCCAACCCCGATTCGGAGCAAGGAATCGACGAGTTCCA AACCGAAATCGAAATGTTATCCAAGCTTAGACACAAACATCTGGTGTCCCTAATCGGATTTTGCGAGGAAGACGGCGAGATGTGCTTGGTCTACGACTAC ATGTCGCAGGGGACAATGCGAGAACACTTATACGACTCGAAAAGAAACCCAACGGGAGCGCTTCACTGGAAGCAGCGCCTCGAAATTTGCATCGGAGCGG CCAGAGGTCTACATTACTTACACACTGGTGCCAAATACACCATCATCCACCGTGACGTGAAGACCACAAACATCCTGCTGGACGACAAGTGGATAGCAAA GGTGTCCGATTTCGGGCTGTCGAAAACGGGTCCCAACATGGAGAACGGGGCGGTGAGCACGGTGGTGAAAGGGAGCTTCGGGTACTTGGATCCGGAGTAC TTCAGGAGGCAACAGCTGACCGAGAAATCAGATGTTTATTCATTTGGAGTGGTTCTGTTCGAAGCATTGTGTGCTAGGCCGGCGTTGAACCCGAGCCTAC CGAAGGAGCAAGTGAGCCTGGCGGACTGGGCGATGGCATGTAAGAGGAACGGTAAGCTGGAAGAGTTGATCGATCCGAACATCAAGGGGACGATTAAGGA AGGATGCTTGAAGAAATTCGCGGACACGGCGGAGAAGTGTTTGAATGAATCAGGGGTGGAGAGGCCTGGGATGGGGGATGTACTGTGGAATTTGGAGTTT GCTTTGCAGTTGCAGGAGGAAGGTGGGAAGAGTGCTTAA
AA sequence Show only first row Show all	>Lus10042537 pacid=23182064 polypeptide=Lus10042537 locus=Lus10042537.g ID=Lus10042537.BGIv1.0 annot-version=v1.0 MAPKNQRSLFLTLSLFLILFNISAAGEKLPPALMLSCGSEEPGTDGEGRKWELDDKYVSGESLKARAQLQDPALPSEVPFMDARIFPADGGGYKLPIRPK TRYFLRLYFYPSDYLDYNISTSFFTVTAGGFTLLQNFSTILTTQATTQAYIFKEYILTPINSDGLDLAIKPEKYDAAFGFINGIELVPMPPDMFGSVRMV GFEETDIQTATATMETMYRLNVGGALVTPTKDSDGMGRTWYQDSMYMSDTGVGVTNEAPEKTRINYDKIPNYIAPAEVFETSRSMGEDGAVNLKYNLTWR FAVDQNFTYVVRFQFCDWQIGLPNQKPFNIYINNQTAQGNEFPMDLFAMAGKGVPIYKDFGMYVGAKPGEEQGTVLVQLHPSIVSHPEYFDASLNGLEIF KMPASGKILAGRNPEMSKMLAHDVELAAEAKRKKSFRSHNVAIVGAASGGAAGFCLVAVVFVVCRKKKNGTHGGPHGSSWLPVHGSSRSSTNNSSGGSNH LASLAQGLCRRFSLPEIKRATHNFHDSNEIGVGGFGKVYKGSIDNGSLQVAIKRSNPDSEQGIDEFQTEIEMLSKLRHKHLVSLIGFCEEDGEMCLVYDY MSQGTMREHLYDSKRNPTGALHWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDDKWIAKVSDFGLSKTGPNMENGAVSTVVKGSFGYLDPEY FRRQQLTEKSDVYSFGVVLFEALCARPALNPSLPKEQVSLADWAMACKRNGKLEELIDPNIKGTIKEGCLKKFADTAEKCLNESGVERPGMGDVLWNLEF ALQLQEEGGKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10042537 [exp]	0	1
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	3.3	0.6457
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	15.8	0.6011
AT2G34080			Cysteine proteinases superfami...		Lus10035292 [exp]	29.1	0.5900
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	40.5	0.5719
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	50.9	0.5692
AT4G39420			unknown protein		Lus10008760 [exp]	68.1	0.5602
AT1G12064			unknown protein		Lus10010487 [exp]	71.2	0.5453
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10032302 [exp]	73.6	0.5615
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009399 [exp]	80.1	0.5600
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	81.2	0.5417

Compare expression of checked genes

Lus10042537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.