Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018799 [exp] 67 / 1e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042539 pacid=23182014 polypeptide=Lus10042539 locus=Lus10042539.g ID=Lus10042539.BGIv1.0 annot-version=v1.0 ATGTTTTCCACGGTTTTCAGTGAAATGAAGGTGAAGAAGGGGAGTACCTACCCGCAAGACAGTCGTGGTTCAATTAAACTTCCACGACCATTCAAAGGAA ACATTGGTAGTTTTCCAAATGGATATGAGGACTTTGATGTGAATGAGAATCTGAAAATCTTAATCGAAAGCGAGATAGCCATCATAAAAAAGTGTATCGA CGAGAAGAAAGGGAATGTTCCTGAAGTAGCGCCCGATAGTGAAATCGAAACAGAGACCGACGCTCCAGAAGATGATGAACTTAGAAAAACAAGACAGGTA CATGATAAGACTCTAGAAAGACTAATAGGTGAGGCGAAATTTGTTCAAGTGTCCAACTTCTCACCACCTCCCTTCAATCTTGGAATTGACAATCCATTGA CCCCGCCTAATTATCGTGAACAAAGAGAGCTGCCTCCCCGGGAGTTGTTGGCGGCGATCGATTCATGGAAGGAGACTGACGATGGGAGATCGCTGGTGGC GATCAGAGGCAGCTCCACAGACAGGCGACGACAGCAGCTTGGAAGCCAGCGGGTCTCGGTCGGAGGAGAACCATCATTGCAGCGGTTGCTGGATCGGATC GGCGACGGCGGCCTTGGATCCAGGGGATATGGAGGCGCGTTGATAGCGTTTGGAGACCAGCAGCGGCTGCGGACGACGGCCAGGAAGCCCTTCGGCGAGT TTGGCGGCGTTTCCACGATTCCTGGAGTTCTGGGCAGAAGTCGCCAGCGGCGAGCTCCTCGCAGGAGAAGAAGGGGAACCCTTTTGCTAGTCCCTAAAGT TAACTGA
AA sequence Show only first row Show all	>Lus10042539 pacid=23182014 polypeptide=Lus10042539 locus=Lus10042539.g ID=Lus10042539.BGIv1.0 annot-version=v1.0 MFSTVFSEMKVKKGSTYPQDSRGSIKLPRPFKGNIGSFPNGYEDFDVNENLKILIESEIAIIKKCIDEKKGNVPEVAPDSEIETETDAPEDDELRKTRQV HDKTLERLIGEAKFVQVSNFSPPPFNLGIDNPLTPPNYREQRELPPRELLAAIDSWKETDDGRSLVAIRGSSTDRRRQQLGSQRVSVGGEPSLQRLLDRI GDGGLGSRGYGGALIAFGDQQRLRTTARKPFGEFGGVSTIPGVLGRSRQRRAPRRRRRGTLLLVPKVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042539 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	18.2	0.5785
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029557 [exp]	25.5	0.5577
					Lus10012326 [exp]	112.9	0.4576
					Lus10013529 [exp]	120.1	0.4694
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	127.0	0.4653
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	157.0	0.4552
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	180.6	0.4396
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10021638 [exp]	196.9	0.4544
AT5G13920			GRF zinc finger / Zinc knuckle...		Lus10020975 [exp]	211.4	0.4409
AT2G25270			unknown protein		Lus10026050 [exp]	215.4	0.4334

Compare expression of checked genes

Lus10042539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.