Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27240 209 / 8e-56 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04960 195 / 8e-54 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G18750 196 / 8e-52 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 166 / 3e-44 Domain of unknown function (DUF3444) (.1) AT4G27980 165 / 6e-43 Domain of unknown function (DUF3444) (.1) AT3G05110 160 / 8e-43 Domain of unknown function (DUF3444) (.1) AT5G18730 160 / 2e-41 unknown protein AT3G06340 155 / 3e-39 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G04980 156 / 1e-38 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 145 / 8e-36 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018975 [exp] 557 / 0 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 274 / 1e-78 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 273 / 2e-77 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 271 / 4e-77 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 269 / 3e-76 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 197 / 7e-52 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 149 / 5e-37 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 144 / 2e-35 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 140 / 5e-34 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043200 [exp] 264 / 3e-74 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 259 / 1e-72 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 226 / 2e-61 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 158 / 1e-39 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 153 / 3e-38 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 153 / 3e-38 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 148 / 1e-36 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 147 / 4e-36 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 145 / 7e-36 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 140 / 3e-34 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10042540 pacid=23181928 polypeptide=Lus10042540 locus=Lus10042540.g ID=Lus10042540.BGIv1.0 annot-version=v1.0 ATGGTTGGGAGTTCAGAGAGTTGGGGGCTTCCTAATCGTACTCGACTGGCTGCTCGAGCAGAAATGATGTTGGGGAGGATAGGAAATTGTAAAGGAACTC AGAATTCAGAAGAAGAAGAAGAATCAAAGAAAGTAATTGAAGTTTGTCCAGTTAGTAGACAGTTCTATGACCTTGATGATGATCTGGAGACAGATGTTGT ACAGGGCATGCGATGTCCTGATCCGGAGTTCTACGATTTCGAGAAAGACAGGGCTGACGACTGCTTGGACGTCGATCAAATATGGGCGATGTACGACGAA ACAGATGCAATGCCTCGGTACTACGGTCGGGTGAGGAAAGTGTTCAAGGAGAAGAGTATGCTGATGATAAGTTGGCTGGAGGCTTCACCCGTTACCGAGG TCGAGCAAGACTGGCACGATCGAGAGTTGCCTATTTCGTGCGGGAGATTCGAGATAGGGGAAGATGGGGTCGTAGGCCGTCTATCGTTGTCGCATCGAAT GCATACCAGGCAGGAAAAAGACACTCATCTTATCTACCCTAATAAGGGTGAGACTTGGGCTATCTTCAAGAACTGGGATATGAAACCTGAATTGCATAAA CCGCCTTACAGTTACGATCTCGTTGACATTTTGACTGATTTTTCTGAAGAAGTCGGTGTTCGGGTTGGTGTTCTGAACAAAGTCGAAGGGTTTGTCAGCA TCTTTCGGAGAGGTAGCCATGATATGGATATGGATATCTCATTCTGTGTATGGCCAACTGAGGTATTGAGATTTTCGCATCGTGTCCCTTCGAGGAGAAT GACCGGCAGGGAAAGAGAAGGTGTCCCTGCTGGATCTTTCGAACTCGATACTGCTGCGCTGCCTAGCAATCTTTTCAACGATCGTGTCGTGGATGGTCGA GCAGAAAAGGGACTTGCTAGCAAGGAAACAGCTAGATCATCTGCAAATTGCAGAGTGGAACTAACAAAAACCTCGATCCACGCTAAGGAGAAGACTATCT TAAAGCCCGGCACCACTCTCGTGGATTCGAGAAAGAAACTTACTGACAATCCGAACTCAAGCAAGACTGTTGACATTACTGGTAAGCTTAAGAAGCAATT GCTGACTGGACAAGACACATTTTGGACCTGCTGCCCGTTTTGTAAAGTGAAGTTCCAGCATTACTCGCGCTTTCAAGATGGTACAATGCGTTGTCAAAAT TGCAGGCAGAATTTCGTCGCATATGATGCAGGTCCAGTTGGTCAGGAAAGTTCTGATGTTCAGGTTAAGAGAAAGAGAATTGACAATTTAAACTCGAGCA CGTTTGTTGACAATGAGAGTGCTGCTAAGCTCAGGGCTGCTGGTAAAGGTGATTACCAATCCCAAACAAGTGATTCTCTCTGTCATTCTAAGAAACCGAG ATCTGAGGATGAGCTTAGTATGGGTCAGGCAGAGTTGCCTAAGCTGAAGGAACGAATTAAGACTTGCAAGACGGAGTTACAAAGAACCCGAGTTTCAATT CAGGAGAGACAAGGTGAGCTTCATTCAATTGAGGAGAAGATCAAAGAAATCAACTCGAGACACGATGATTGTGTTACTAAGCAGGAGGCAGAGCTAGCTA CGCTGAATGAACGAATTAAGGAACGTAAGAAAGAGCTCGAAAAGACCGAATTGTCTCTACAAGAGGGACAAAGACAGCGGCTCGTGAGAGATTGCGATCT GCAATCGATCGAGGAGTCCATCAAAGAAGCGAATTCGAAATTCGAAGAGAGAAAGAAACAGTACAATCTATTGAAAAAGTCCGTCAGTGAGTGCAAGGTG GATCTCCGGTCTAAGCAAAGCCAACTCAAGGGGCTCAAGCGGTCCATCCAAGAATGTACAATGAAAGAAAAGGCGCTGAGCTATGTCAGGGAGGAAGTAA GGGAATGCTGTCAAACTCTCGAGTGGAAAGAGAAGGAATTGGATGATATAAAGAAGTCAATGGAAGCTACTAACCTTGTTCTTGAAGTGAGAGTGAAGCA ACTGAATGAAGTCAAATCTAAGCTTGAGCACAATTGTGGAAAGCTCAAAGCAATGGATGAGCATCAACACCGTATCAAGAAGACAATCATGGAGCTGAGG CGAAAACGGGAGTATTATCAGTCAGTCGAGAAGCCGTCTCAAGAACTATCCGCAGTGATGTTCATGAAGGATCAAAACACAAAGCTTTCGGTTGCAGGCA AAGCTAGAGAACTGCAATTGCTCCTGGATAAACACACGAGGAACCATGATCTTCTCCAGAAAGAAGTTTCCACACTCATCAAGAGCTCAACCGAACCCGC AAAGCTGGTATTGGAAGCGATGAATGGGTTCTATCCTCCGGATGCAGAAAACAAATCCATGGACTACGAGCTTTCCATCACAAGGAGAAGCTGCATCAAT CTGTTGGAACATTTACTCAAGCTCGGACCTCCAATTATGAGTGAATGGAAGGCCATCATAATGATGTCAAAGGCTGCAACTTCCTTGGAAGTTCTCGGGT TCTTGCAGCTTGTATCTGCATTTGGTCTGGCTCCTGGTTTTGGTCCTGGTGAAGTTAAGCAGCTCCTTCTTAGTGGCCTTCCTCGACAAGGCAATGGCTC TGAAACATGGCGATCTCTTGGCATCATGGATGACTTGACTGGCAAGCTTTCCATCTTTCATGATCTCATTTGTTGA
AA sequence Show only first row Show all	>Lus10042540 pacid=23181928 polypeptide=Lus10042540 locus=Lus10042540.g ID=Lus10042540.BGIv1.0 annot-version=v1.0 MVGSSESWGLPNRTRLAARAEMMLGRIGNCKGTQNSEEEEESKKVIEVCPVSRQFYDLDDDLETDVVQGMRCPDPEFYDFEKDRADDCLDVDQIWAMYDE TDAMPRYYGRVRKVFKEKSMLMISWLEASPVTEVEQDWHDRELPISCGRFEIGEDGVVGRLSLSHRMHTRQEKDTHLIYPNKGETWAIFKNWDMKPELHK PPYSYDLVDILTDFSEEVGVRVGVLNKVEGFVSIFRRGSHDMDMDISFCVWPTEVLRFSHRVPSRRMTGREREGVPAGSFELDTAALPSNLFNDRVVDGR AEKGLASKETARSSANCRVELTKTSIHAKEKTILKPGTTLVDSRKKLTDNPNSSKTVDITGKLKKQLLTGQDTFWTCCPFCKVKFQHYSRFQDGTMRCQN CRQNFVAYDAGPVGQESSDVQVKRKRIDNLNSSTFVDNESAAKLRAAGKGDYQSQTSDSLCHSKKPRSEDELSMGQAELPKLKERIKTCKTELQRTRVSI QERQGELHSIEEKIKEINSRHDDCVTKQEAELATLNERIKERKKELEKTELSLQEGQRQRLVRDCDLQSIEESIKEANSKFEERKKQYNLLKKSVSECKV DLRSKQSQLKGLKRSIQECTMKEKALSYVREEVRECCQTLEWKEKELDDIKKSMEATNLVLEVRVKQLNEVKSKLEHNCGKLKAMDEHQHRIKKTIMELR RKREYYQSVEKPSQELSAVMFMKDQNTKLSVAGKARELQLLLDKHTRNHDLLQKEVSTLIKSSTEPAKLVLEAMNGFYPPDAENKSMDYELSITRRSCIN LLEHLLKLGPPIMSEWKAIIMMSKAATSLEVLGFLQLVSAFGLAPGFGPGEVKQLLLSGLPRQGNGSETWRSLGIMDDLTGKLSIFHDLIC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10042540 [exp]	0	1
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	9.9	0.7753
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	12.2	0.7860
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10028101 [exp]	12.8	0.7431
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	16.5	0.7706
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	23.5	0.7706
AT3G09100			mRNA capping enzyme family pro...		Lus10027759 [exp]	31.2	0.7565
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	39.0	0.7575
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	45.7	0.7242
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	48.3	0.7182
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	49.1	0.6836

Compare expression of checked genes

Lus10042540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.