Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30620 93 / 2e-22 winged-helix DNA-binding transcription factor family protein (.1.2) AT2G18050 76 / 2e-16 HIS1-3 histone H1-3 (.1.2) AT1G06760 76 / 6e-16 winged-helix DNA-binding transcription factor family protein (.1) AT1G14900 57 / 1e-09 HMGA high mobility group A (.1) AT1G49950 54 / 4e-08 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G72740 51 / 2e-07 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G18035 51 / 5e-07 HON4 winged-helix DNA-binding transcription factor family protein (.1) AT1G54260 44 / 4e-05 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022001 [exp] 161 / 8e-48 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006562 [exp] 127 / 5e-36 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005534 [exp] 120 / 2e-32 AT2G30620 116 / 9e-32 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005535 [exp] 100 / 1e-24 AT2G30620 124 / 8e-35 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006561 [exp] 92 / 1e-21 AT2G30620 115 / 1e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10025968 [exp] 77 / 1e-16 AT2G18050 132 / 6e-39 histone H1-3 (.1.2) Lus10014267 [exp] 71 / 4e-15 AT2G18050 102 / 1e-28 histone H1-3 (.1.2) Lus10032231 [exp] 56 / 1e-08 AT1G48620 103 / 2e-23 high mobility group A5 (.1) Lus10024594 [exp] 56 / 1e-08 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076800 [exp] 81 / 5e-18 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) Potri.008G162300 [exp] 79 / 1e-17 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G116600 [exp] 74 / 2e-15 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.002G199900 [exp] 72 / 5e-15 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.013G042700 [exp] 72 / 6e-15 AT2G30620 66 / 2e-13 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.007G014200 [exp] 67 / 3e-13 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.005G219800 [exp] 69 / 4e-13 AT1G06760 89 / 1e-20 winged-helix DNA-binding transcription factor family protein (.1) Potri.015G040200 [exp] 66 / 7e-12 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.002G043100 [exp] 64 / 9e-12 AT2G30620 92 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.009G087000 [exp] 58 / 1e-09 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10042541 pacid=23181796 polypeptide=Lus10042541 locus=Lus10042541.g ID=Lus10042541.BGIv1.0 annot-version=v1.0 ATGGCTGAAACGGAAGCTCCCATCTCCGACATCGTTCCGGCGGTCACTCCGGTGGAGGACGAGAAACCCTCCCCGAAACCTGCCTCCAAGACCAAAGAGC CCAAGGCTAAGAAGGCAGCTGCTACTAAGAAGCCCAAGCCAAAGACTGCTCGTAACTATCCTTCTTTCGAAGAGATGATTACCGAGGCAATTTCGTCCCT GAAGGAGAGGACTGGATCGAGCCAGATCGCAATCGCGAAGAAGATCGAGGACAAGCAGAAGAGCCTGCCGATGAATTTCAGGAAGCTTCTGTCGGTTCAG CTGAAGAGGCTCGCAGCTTCAGGAAAGCTCGTCAGGGTGAAGGCCTCGTTCAAGCTTCCTTCAGCTCGCTCGGCTTCTTCCGCTGCAGCTCCAGCAGTTA AGAAGCCCGCCGCCGCCGCGAAACCGAAAGCAGCTGCCAAACCGAAAGCAGCTGCGACCAAGGCTGCAGCGAAGCCGAAGGCGAAAGCAGCAACAGCTAC AAACGCTAAGCCGAAGGCGAAAGCCGCTGCTGCGTCTAAGCCCAAAGCACCAGCAGCTAAGTCAACGGCGAAGTCTCCAGTGAAACGGAAGGCGCCAGCT GCTGCTCCTAAGCCGGCAGCCAAGAAGGCGAAAACAGCTGCTAAACCTGCTGCAGCCGCTGCAAAGGCTAAGCCGAAGGCTAAAGCCGTTGCTACCAAAG CTAAAGCGGTCACGCCAGCTTCGAGATCAGCACCGAAGAGGAAGGCGTCGGCTCCGAAGCCGGCTGCCAAGGTAGCGAAGACAGCCTCGGTAGCATCGCC AGCGAAGAAGAAGGCAGCGGCGAAGCCGAAGAAGACAGCTCCGGCGGCCAAGGGAGGGAAGAAAGCTTCGGCGACGAAGAAGGGTAAGAAGTGA
AA sequence Show only first row Show all	>Lus10042541 pacid=23181796 polypeptide=Lus10042541 locus=Lus10042541.g ID=Lus10042541.BGIv1.0 annot-version=v1.0 MAETEAPISDIVPAVTPVEDEKPSPKPASKTKEPKAKKAAATKKPKPKTARNYPSFEEMITEAISSLKERTGSSQIAIAKKIEDKQKSLPMNFRKLLSVQ LKRLAASGKLVRVKASFKLPSARSASSAAAPAVKKPAAAAKPKAAAKPKAAATKAAAKPKAKAATATNAKPKAKAAAASKPKAPAAKSTAKSPVKRKAPA AAPKPAAKKAKTAAKPAAAAAKAKPKAKAVATKAKAVTPASRSAPKRKASAPKPAAKVAKTASVASPAKKKAAAKPKKTAPAAKGGKKASATKKGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30620			winged-helix DNA-binding trans...		Lus10042541 [exp]	0	1
AT2G30620			winged-helix DNA-binding trans...		Lus10022001 [exp]	3.0	0.8428
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10030951 [exp]	3.2	0.7995
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10021405 [exp]	9.3	0.8161
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	19.7	0.8139
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	24.7	0.7706
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	29.1	0.8055
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	31.3	0.7697
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	31.5	0.7816
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	35.0	0.7942
AT5G03670			unknown protein		Lus10027723 [exp]	36.3	0.7585

Compare expression of checked genes

Lus10042541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.