Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04650 544 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G56000 126 / 5e-32 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G55980 97 / 2e-21 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022002 [exp] 872 / 0 AT3G04650 588 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039206 [exp] 113 / 2e-27 AT1G56000 526 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10013734 [exp] 101 / 3e-23 AT1G56000 497 / 4e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055800 [exp] 574 / 0 AT3G04650 657 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G438500 [exp] 119 / 2e-29 AT1G56000 528 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042542 pacid=23181692 polypeptide=Lus10042542 locus=Lus10042542.g ID=Lus10042542.BGIv1.0 annot-version=v1.0 ATGGCCGCCTTCTCTATTTCCAACTCATCATCATCTTCCCTACTTCTTCAACCTTTCAACCACCCTGCAACAAAACCCTTCTCCTCCTCTGCTTTGATTT TCACTAAAACCCTGTTCCTGACTCGTGCTTCCTCCAATGAAGCAGCCAGCAGCAAACGAAAACCCACTTCCAAGAAAAACAACAGGAGACCGTTTTCCAG AAGGTCCATTCTCAAGAAATCATTCAATCAAGAGCAGGTCATCTTCACCGCTCCCATCTCCAGCGACCCACACGTGGCTATAATCGGCGGCGGCATGGCC GGTCTTCTTTGCGCCTTGGGTTTGGAGCAACGAGGGTTCAAGTCCACAGTTTTCGACACGGGGATACATGGGTTGGGAGGGAGGATGGGGACTAGAAACA TTATAAATGGCTCTGCTGGGGATGAACTGGTATTTGATCATGCTGCTCAGTTCTTTACTGTAAGTGATCCTCTATTTGGTGAGCTAGTCAATGATTGGTT GGGGAAAGGTCTGGTTCAAGAATGGAGTGGCAGAATTGGGGAGATTGAGGCTGGTGGTGCTGGCTTTTCCCCATTCCCACCTTCACCTCCGAGATATGTT GGTGTTAATGGAATGCGGTATCTTGCTGACTCGTTACTGTCACAGAGTGGCTTGATCAATGTGGTGAGACCTTGCTGGATAAGTAAACTAGAGCCGTTTA ATGGGTTGTGGCACCTGTGTGAGAACGGGAAGCCCCGCGGTCAGTTTGATGCCATTGTGATTGCACACAACGGAAAATGTGCAAATCGGTTACTTTCTAC AGCAGGCTTGCCCTTAGTCGCAAGACAAATGAAGAGGCTTGATCTAAGCTCCATATGGGCGCTGATGGCGGCCTTTGACGATCCACTCCCCATCCCCTTT GAAGGAGCATTTGTGAAAGGAGTGGACGCATTGTCCTGGATGGGAAACAACTCCAGGAAGCTTGGCAGTAGTGGCAGTAGACAAAGCCGCGAATGCTGGA CATTTTTCAGCACGGCAGCTTATGGGAAGAAGAACAAAGTTCCACAGGAAAGCATACCAAATGAAACGGGGGAGAAGGTGAAACGGAACATGTTGGAAGG AGTTGAAGCAGTGATGGGAATGGAGAAAGGACAGCTGCAAATACCATCTTATACTAAGCTGCAGCTATGGGGTGCTGCACTGCCGACGAACAGTCCAGGG ATACCGTGCATATTTGATGCTCAAGGAAGGGCTGGAATATGTGGAGATTGGCTTCTGGGTTCGAACATGGAGTCTGCAGCATTGAGCGGCATGGCTCTTG GTAATCATATAGGGAATTACTTTGAAAATTGCAGTGGTGATGGCGAGGAATTTGGGATCGGTCTGCATAACGAGTTCCACCCGATTGAAGGACATGACAT AGGGCAGTTCTCAGGGTTGAAAGACGAGCAAGTAACCAAGCCAAACTCTGCAGAAGTTATTGGCGACAAAGTTGGCGTTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10042542 pacid=23181692 polypeptide=Lus10042542 locus=Lus10042542.g ID=Lus10042542.BGIv1.0 annot-version=v1.0 MAAFSISNSSSSSLLLQPFNHPATKPFSSSALIFTKTLFLTRASSNEAASSKRKPTSKKNNRRPFSRRSILKKSFNQEQVIFTAPISSDPHVAIIGGGMA GLLCALGLEQRGFKSTVFDTGIHGLGGRMGTRNIINGSAGDELVFDHAAQFFTVSDPLFGELVNDWLGKGLVQEWSGRIGEIEAGGAGFSPFPPSPPRYV GVNGMRYLADSLLSQSGLINVVRPCWISKLEPFNGLWHLCENGKPRGQFDAIVIAHNGKCANRLLSTAGLPLVARQMKRLDLSSIWALMAAFDDPLPIPF EGAFVKGVDALSWMGNNSRKLGSSGSRQSRECWTFFSTAAYGKKNKVPQESIPNETGEKVKRNMLEGVEAVMGMEKGQLQIPSYTKLQLWGAALPTNSPG IPCIFDAQGRAGICGDWLLGSNMESAALSGMALGNHIGNYFENCSGDGEEFGIGLHNEFHPIEGHDIGQFSGLKDEQVTKPNSAEVIGDKVGVAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10042542 [exp]	0	1
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	5.4	0.9309
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	12.2	0.9154
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	12.6	0.9264
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	13.3	0.9307
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	14.5	0.9290
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	16.0	0.8996
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10031051 [exp]	16.7	0.8659
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	18.7	0.9164
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	20.6	0.9261
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	21.6	0.9174

Compare expression of checked genes

Lus10042542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.