Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54460 123 / 1e-32 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G28646 112 / 7e-30 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 92 / 1e-21 WDL1 WVD2-like 1 (.1.2.3) AT3G23090 90 / 2e-20 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G35880 70 / 2e-13 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 65 / 1e-11 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 62 / 1e-10 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 59 / 2e-09 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022003 [exp] 456 / 5e-163 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10000016 [exp] 272 / 2e-92 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 186 / 9e-57 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 182 / 2e-55 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10021223 [exp] 87 / 5e-19 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 85 / 3e-18 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002915 [exp] 69 / 9e-13 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 62 / 2e-10 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 61 / 3e-10 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042800 [exp] 159 / 4e-46 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.005G055900 [exp] 139 / 1e-38 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G162800 [exp] 100 / 1e-23 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 99 / 2e-23 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.018G027500 [exp] 66 / 7e-12 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G254400 [exp] 66 / 9e-12 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 63 / 6e-11 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G200400 [exp] 59 / 1e-09 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 58 / 3e-09 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 58 / 4e-09 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10042543 pacid=23181675 polypeptide=Lus10042543 locus=Lus10042543.g ID=Lus10042543.BGIv1.0 annot-version=v1.0 ATGGATAAGAAGCATAAAGGTGTTGCAAGGAAGTTGAAAAACGGTAGTATGCATCAAGAGAAAGAAACCAAGGAGGACTTGGATGTGTTAGGAGTGAAGA ACATGAATAATGGTAGTAGTACCCCTGTTTCTGATCAGAAAAGCCAGAAGCCAAAAGCTGAGAAGTCAATTGATGGTAAAGTGACGAGCTTTCCCACGCC AAAGTCGTCTAATCTCGGTCCAGGAAGCGCTGAAGCAGTTTGTTTAGAGACTGAAGAGCATGGAGATTATGGGAAGATTTCAGAAAATGATGAGAAACAC AATGATGAAGATGATAAGAACTCGGTTGCTTCCTCGTCAGCTGCATATAAGAATACTAAATCTGCAGTGACTGTTGGCACAGCTCCTCAATTTAAATCTG CTGAGCGTGCCCAAAAGCGGAAGGAGTACTATATGAAATTGGAGGAAAAACGGAAAACTCTCGAGGCTGAGAAAGCTCAAGCTGAGGCCAGGAACAAGGA AGAGCAACAAGCAGCGATCCGACAGATGAGAAAGAACATGATCTTCAAAGCGAACCCAGTCCCCAATTTCTATTATGAGCCACCTCCACCAAAGGTTGAA CTCAAGAAGCTGCCATTGACGCGGCCCGTGTCCCCAAAGCTAAACCGGAGAAAGAGCTGTGGCGACCTGGTCTACACATCTCAGGCGCAACAAGTCAGCA GCAAGCACTGTGCCAAGCATCGCGAAAGCCTCGGTCCGGACCATAATGAATCTCCATCTGCAACAAGAGCCATTCTTCGTCGCACACAGACCGCAAAGGC GAAAAGCTATTCAGGGTTTGAACAAGAAGAACATCAGGACGTCAGTGAAACCAATGATGGTCCTGAAGAGGTCAACAATGAGCAACCGAGCGCCAATGTT TCTGTTGAGTCATGA
AA sequence Show only first row Show all	>Lus10042543 pacid=23181675 polypeptide=Lus10042543 locus=Lus10042543.g ID=Lus10042543.BGIv1.0 annot-version=v1.0 MDKKHKGVARKLKNGSMHQEKETKEDLDVLGVKNMNNGSSTPVSDQKSQKPKAEKSIDGKVTSFPTPKSSNLGPGSAEAVCLETEEHGDYGKISENDEKH NDEDDKNSVASSSAAYKNTKSAVTVGTAPQFKSAERAQKRKEYYMKLEEKRKTLEAEKAQAEARNKEEQQAAIRQMRKNMIFKANPVPNFYYEPPPPKVE LKKLPLTRPVSPKLNRRKSCGDLVYTSQAQQVSSKHCAKHRESLGPDHNESPSATRAILRRTQTAKAKSYSGFEQEEHQDVSETNDGPEEVNNEQPSANV SVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54460			TPX2 (targeting protein for Xk...		Lus10042543 [exp]	0	1
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	10.4	0.8488
					Lus10014692 [exp]	13.0	0.8643
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	17.9	0.8244
AT3G18800			unknown protein		Lus10020872 [exp]	19.1	0.8610
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	23.7	0.8503
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10027132 [exp]	25.1	0.7850
AT3G09180			unknown protein		Lus10016953 [exp]	28.9	0.7959
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10042308 [exp]	37.9	0.8386
					Lus10017551 [exp]	39.2	0.8372
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10011033 [exp]	41.6	0.8361

Compare expression of checked genes

Lus10042543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.