Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37690 840 / 0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) AT2G05140 199 / 2e-60 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (.1) AT5G35360 47 / 3e-05 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022004 [exp] 1163 / 0 AT2G37690 892 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Lus10005526 [exp] 287 / 3e-90 AT2G37690 271 / 2e-84 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Lus10017534 [exp] 45 / 0.0001 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 45 / 0.0002 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012300 [exp] 910 / 0 AT2G37690 885 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Potri.013G043500 [exp] 880 / 0 AT2G37690 867 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Potri.006G078200 [exp] 52 / 1e-06 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.018G146300 [exp] 45 / 0.0002 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0224 [flax] [poplar] DHQS PF00731 [flax] [poplar] AIRC AIR carboxylase CL0179 [flax] [poplar] ATP-grasp PF02222 [flax] [poplar] ATP-grasp ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10042546 pacid=23181710 polypeptide=Lus10042546 locus=Lus10042546.g ID=Lus10042546.BGIv1.0 annot-version=v1.0 ATGCTTCAACGGATTGTTCCCAACAATTTCCATTCTTTCGCAGCAGCCTCAGATTTCTGCTCACTCAAGCCTTCTTTCTTTCCTCCCTCCACCTCTCAAT CTTTCTCCCTCGCCATGGACAACAAGGACAAACACAAGTACTCATTTCACTCCCCCTTTGCTTCAAATCCATTGTCGCTGCGAAATCAGTCTCATCCTCC TCAAAATCAAGTCGTGGCCTGTCGAGCTTCCCATTCCACTTCTTGGAGTGGTGATGATGAAGCAGTGGCTGTTCATGGGGTATCTGAGACAGTGGTGGGT GTTTTGGGAGGGGGTCAATTGGGGAGGATGCTTTGCCAGTCAGGATCGGAGATGGCCATCAAAGTTATAGTCTTGGACCCTCTTGTTGGCTGCCCTGCTA GCTCCATTGCTCATGATCATATGGTTGGGAGCTTCGATGACAGTGCTACTGTTGAGGAGTTCGCCAAGAGATGTGGAGTGTTGACTGTTGAAATTGAGCA CGTTGATGTTGCTACTCTAGAGAGGCTTGAGCAGCAAGGTGTTGACTGCCAACCGAAAGCCTCCACTATTCGAATCATACAAGACAAGTATCTTCAGAAG GTTCATTTCTCTCGACACGGGATTCCACTACCCGAGTTTATGCAGATAGATGACCTAGAAGGTGCAGTGAGAGCAGGTGATTTGTTTGGTTATCCTCTGA TGATTAAAAGCAAACGGTTAGCATATGATGGACGAGGAAATGCGGTAGCTAAGAGTAAAGAGGAGCTTTCTTCTGCTGTGGCATCGCTTGGAGGATTTCA CCGTGGTTTGTATGTTGAAAAATGGGCCCCTTTTGTCAAAGAGTTAGCAGTAATTGTGGCGAGAGGCAGAGACAATTCTATAGTTTGCTATCCTGTAGTT GAAACTATTCACAAGGAAAACATATGTCACATAGTGAAGGCACCGGCTGTGGTGCCATGGAAAGTTAGGCAGCTGGCCACCGATGTTGCACGTAAAGCTG TTAGTTCTCTAGAAGGTGCTGGTGTTTTTGCAGTTGAGCTGTTTTTGACAAGTGATGGCCAGATTCTTCTAAATGAAGTAGCTCCAAGACCTCATAACAG CGGTCATCACACAATCGAAGCTTGCTATACCTCGCAATTTGAGCAACATTTACGAGCTGTTCTGGGGCTTCCTCTCGGTGATCCATCAATGAAGACTCCA GCTGCAATAATGTACAATCTACTCGGTGAAGAGGAGGGAGAAGGGGGTTTCCACTTGGCTCATCAGCTTATCGGAAAGGCATTGACTATACCAGGAGCTA ACGTTCATTGGTATGACAAGCCAGAAATGCGAAAGCAACGGAAAATGGGTCATGTCACTATAGTTGGCCCTTCGATGGGCACGGTCGAAGCTCGGATGAA TTCTATGTTGAGTGAGCAAGGTTCCAGTAATCAATCTGTGGCTGCAGCGCCACGCGTTGGGATCATTATGGGCTCGGATTCAGACCTTCCTGTCATGAAA GATGCTTCAAGAATATTGACGATGTTTGGTGTTCCACATGAGGTCAAAATAGTATCTGCACACCGAACTCCGGAGCTGATGTACTCTTACGCCTCATCTG CTCGGGACAATGGTCTTCAGTTGATCATTGCCGGTGCTGGTGGAATGGTGGCTTCGCTTACTCCACTGCCCGTTATCGGTGTACCAGTGCGTTCTTCTTC TCTCGACGGAATGGATTCGCTCCTATCAATTGTGCAGATGCCGAGAGGTGTACCTGTCGCAACCGTTGCGATAAACAACGCGACGAATGCAGGTCTGCTG GCCGTCAGGATATTGGGGGCTGGCGATCCCGATCTATTAGCCAGGATGAGCCAGTATCAAGAAGACACAAGAAATGAAGTGTTGAAGAAAGCTGAAAAGC TGGAGAGTGAGGGCTGGGAAACCTACTTGAATCCTTGA
AA sequence Show only first row Show all	>Lus10042546 pacid=23181710 polypeptide=Lus10042546 locus=Lus10042546.g ID=Lus10042546.BGIv1.0 annot-version=v1.0 MLQRIVPNNFHSFAAASDFCSLKPSFFPPSTSQSFSLAMDNKDKHKYSFHSPFASNPLSLRNQSHPPQNQVVACRASHSTSWSGDDEAVAVHGVSETVVG VLGGGQLGRMLCQSGSEMAIKVIVLDPLVGCPASSIAHDHMVGSFDDSATVEEFAKRCGVLTVEIEHVDVATLERLEQQGVDCQPKASTIRIIQDKYLQK VHFSRHGIPLPEFMQIDDLEGAVRAGDLFGYPLMIKSKRLAYDGRGNAVAKSKEELSSAVASLGGFHRGLYVEKWAPFVKELAVIVARGRDNSIVCYPVV ETIHKENICHIVKAPAVVPWKVRQLATDVARKAVSSLEGAGVFAVELFLTSDGQILLNEVAPRPHNSGHHTIEACYTSQFEQHLRAVLGLPLGDPSMKTP AAIMYNLLGEEEGEGGFHLAHQLIGKALTIPGANVHWYDKPEMRKQRKMGHVTIVGPSMGTVEARMNSMLSEQGSSNQSVAAAPRVGIIMGSDSDLPVMK DASRILTMFGVPHEVKIVSAHRTPELMYSYASSARDNGLQLIIAGAGGMVASLTPLPVIGVPVRSSSLDGMDSLLSIVQMPRGVPVATVAINNATNAGLL AVRILGAGDPDLLARMSQYQEDTRNEVLKKAEKLESEGWETYLNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37690			phosphoribosylaminoimidazole c...		Lus10042546 [exp]	0	1
AT1G63810			unknown protein		Lus10026014 [exp]	2.6	0.9531
AT2G37690			phosphoribosylaminoimidazole c...		Lus10022004 [exp]	3.7	0.9303
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	5.5	0.9490
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	6.9	0.9405
AT1G69070			unknown protein		Lus10019174 [exp]	7.3	0.9474
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	8.9	0.9438
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	9.2	0.9410
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	9.4	0.9058
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	10.8	0.9346
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	11.0	0.9393

Compare expression of checked genes

Lus10042546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.