Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03970 389 / 5e-134 F-box associated ubiquitination effector family protein (.1.2) AT1G47790 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT3G10240 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT1G48060 47 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT1G47390 47 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT1G12855 44 / 0.0001 F-box family protein (.1) AT5G07610 44 / 0.0002 F-box family protein (.1) AT5G15710 44 / 0.0002 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022006 [exp] 755 / 0 AT5G03970 400 / 2e-138 F-box associated ubiquitination effector family protein (.1.2) Lus10037892 [exp] 48 / 8e-06 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10024021 [exp] 47 / 2e-05 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10038606 [exp] 45 / 0.0001 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10041733 [exp] 44 / 0.0001 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10008871 [exp] 42 / 0.0005 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G013900 [exp] 488 / 1e-172 AT5G03970 397 / 2e-136 F-box associated ubiquitination effector family protein (.1.2) Potri.003G215900 [exp] 61 / 4e-10 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.018G132800 [exp] 60 / 2e-09 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.005G043500 [exp] 58 / 5e-09 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.010G254000 [exp] 54 / 7e-08 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.007G027200 [exp] 54 / 8e-08 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.017G058900 [exp] 53 / 2e-07 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.012G014700 [exp] 48 / 7e-06 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.015G028500 [exp] 46 / 4e-05 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.007G037500 [exp] 45 / 4e-05 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042547 pacid=23181679 polypeptide=Lus10042547 locus=Lus10042547.g ID=Lus10042547.BGIv1.0 annot-version=v1.0 ATGTCGCTTGTTGATAACGTTAATGCTGCATTGAGCTCCGATGACATCTTATGCGAAATACTCATCCGCCTTCCTCCAGAGTTAGTCTTCAGATCACTGC TTGTATCAAAGAGGTGGCTTCACTTCATCTGCAGCTCTTCTTTTCTTCAGTACTACCTGAACCGATGGCCAGTCAGCTACAGGCTGTTAGGGTTCTTCAT CTCCAACACTTTGTATCTAAAGAGACCAAAAGGCGGCCAACGCAGGCCGAAATCCGAGCCTGCTCTTCCTATACTACCGACTTGTAAAGAAGGTGACGAC CTATTAGATTCCAAGGTCCTTAAACCGCTCGGTTATCTGATCGACTCGGCAAACGGTCTTCTTCTCAGCGGCCGCCATCCAAAATCGTATTTTGTCTGGA ATCCGGTAACCGACGAACGCCAGAAGCTCCCGCGTCCTCGTGTGCACTTCGATGAGCTGTGCATGGCGTTTCTCGTAGATAACTACCCGATTGAGGGTAT GTGCTACAAGGTCATCCGTGCAAAATGCGAGTCGGTAATTGATGACTGCAAGACTGCAACGATTGAAACTTACGATTCCAAGACCAAGACATGGTACTAT TCCACGCTCGATTGTTCTTCGGCATTGGCATTGTCTCCTTGGTTGGCGGCTACTGTGATCCGAGGAGTGGTTCATTGGTATGCAGCTATGGGGAATCTGG CGATATATGATTCAAAGTGTGACCAGAGGCGTATAGAGGTGGTTAAACTTCCCGGGGCTAATGTTTACGAGGAGCGTGCTCTTGGAGAGTCTTCTGATGG AGTTCTGCAGTATGGCTGGAGCAAGGAAACTGGAATGGAGATATGGCTTCTCAAGAATGACAATAGTTCGACCGGTTTCGAATGGAACTTGAAGTACAGG TTGAAGTTCAAAACAATGTGGAAGAGGAATCTAAGATTGGCAACGACAGGTTGCAGGTTCGATAAAGAGACTCAGATATTGTCGTTCTACCCGAAAGATT CCGATTCTGTTTATATTAGGTCTGGTTCGGAGATATTTATCTATCACTTGGGAAGAGAAAGAGTAGAACCTGTGGTCTATCATGGACGTGGCTCTTCCAT AATGTGGGATTTCAGCCGAGTGGTGCCTTACTTCCGACCTTGTTGGCCTCATTCTTCTCACCGCGATGTCGCGTGA
AA sequence Show only first row Show all	>Lus10042547 pacid=23181679 polypeptide=Lus10042547 locus=Lus10042547.g ID=Lus10042547.BGIv1.0 annot-version=v1.0 MSLVDNVNAALSSDDILCEILIRLPPELVFRSLLVSKRWLHFICSSSFLQYYLNRWPVSYRLLGFFISNTLYLKRPKGGQRRPKSEPALPILPTCKEGDD LLDSKVLKPLGYLIDSANGLLLSGRHPKSYFVWNPVTDERQKLPRPRVHFDELCMAFLVDNYPIEGMCYKVIRAKCESVIDDCKTATIETYDSKTKTWYY STLDCSSALALSPWLAATVIRGVVHWYAAMGNLAIYDSKCDQRRIEVVKLPGANVYEERALGESSDGVLQYGWSKETGMEIWLLKNDNSSTGFEWNLKYR LKFKTMWKRNLRLATTGCRFDKETQILSFYPKDSDSVYIRSGSEIFIYHLGRERVEPVVYHGRGSSIMWDFSRVVPYFRPCWPHSSHRDVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	0	1
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	1.0	0.9332
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	2.4	0.9166
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	2.8	0.9130
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	4.9	0.9063
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	6.5	0.9078
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	6.6	0.8837
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	6.9	0.9206
AT1G61170			unknown protein		Lus10018461 [exp]	8.1	0.9034
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	8.4	0.9109
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	9.7	0.8877

Compare expression of checked genes

Lus10042547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.