Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04580 921 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 718 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT1G04310 509 / 4e-172 ERS2 ethylene response sensor 2 (.1) AT1G66340 457 / 2e-150 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 343 / 2e-108 ERS1 ethylene response sensor 1 (.1) AT5G35750 80 / 5e-15 AHK2 histidine kinase 2 (.1) AT1G27320 79 / 7e-15 AHK3 histidine kinase 3 (.1) AT2G01830 76 / 6e-14 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 66 / 1e-10 AHK1, ATHK1 histidine kinase 1 (.1) AT5G26594 55 / 7e-09 ARR24 response regulator 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022009 [exp] 1466 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 1219 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10006574 [exp] 1211 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10021880 [exp] 850 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 846 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 841 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 834 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 437 / 9e-143 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10020778 [exp] 436 / 4e-142 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044100 [exp] 1061 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 1052 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.010G074300 [exp] 907 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 895 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 449 / 1e-147 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 445 / 8e-146 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 364 / 6e-116 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.003G171000 [exp] 86 / 8e-17 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 78 / 2e-14 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G057400 [exp] 76 / 1e-13 AT1G27320 1384 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10042549 pacid=23181858 polypeptide=Lus10042549 locus=Lus10042549.g ID=Lus10042549.BGIv1.0 annot-version=v1.0 ATGTCGAGAGCATTATCAATAGAATTCTTGTTGTTGATAACATCATTCATTTCGGCCTACTCAGTATCTGCTGCGGCAGATAACGAGTTCGCGAATTGTA ATTGTGACGACGAAGGAGGAGGATTCTGGACTGTACAGAACATTCTCGAGTGCCAGAGAGTGAGCGATATCTTGATCTTTGTAGCTTATTTTTCAATCCC AATTGAACTCGTTTACTTTGTTAGCTATTCAAACGTTCCCTTCAAGTGGGTTTTCCTCCAGTTCACAGCATTCATATGCCTTTGTGGACTAACTCACTTG CTCAATGCCTGGACTTATTACGGCCCCCACTCGTTCCAGTTGATGCTCTCTCTCACTGTTGCAAAGTTCCTTACAGCTTTGGTTTCGTGCGCCACTGCTA TAACCCTCCTCACTTTGTTCCCCATGCTTCTCAAAATGAAAGTGAGAGAACTTTACTTGATCCAAAATGTTATGGAGTTGGACCAAGAGGTCGGGATGAT GAAGAAGAAGAAAATAGCTAGCATCCACGTAAGGATGTTGACCCGGGAGATTCGTAAGTCCCTCGACAAGCACAACATATTGTATACAACTCTCGTTGAA CTCTCAAAGACGTTGGGTTTGTACAACTGTGCGGTATGGATGCCGAATGAGAAGAGGACTGAGATGAACCTTACCCACGAGCTACGAGCAAGTTCTCCAG GAAGCCATCAGTTTTCGATCCCTATGAATGACCCTGATTTGTTAGACATAAAAGCTACCAAAGGTGTGAAGATTTTGAGGTCGGATTCAGCACTCAGAGA TGTAAGCAGCGGTGGTAGCAACAACGAAGGATCTGGTCCTGTTGCTGCAATCAGGATGCCGATGCTTCGAGTTTCGAATTTCAAAGGCGGTACCCCAGAG TTTGTAGATACTTGTTACGCTATCCTGGTTTTGGTCCTTCCGAATGGCAGTTCTTGGTTTGATGAAGCAATGGAGATAGTGGAAGTTGTTGCTGATCAGG TAGCAGTGGCGTTATCCCATGCTGCAGTTCTTGAAGAATCTCAGCTGATGAGGGAGCAGTTGAGCGAGCAAAATCGGGCACTGCAACAGGCTAAGATGAA CGCGACGATGGCTAGCCAGGCAAGGAACTCGTTCCAAAAGGTGATGAGTCATGGGATGAGGAGACCGATGCACTCGATTATCGGGTTGCTCTCGCTGGTC CAGGACGACAAGATGAGCTTTGACCAGAAAATCGTAGTCGATACATTGATGAAAGCCAGCAACGTGCTTTCGACTTTGATCAACGACGCAATGGAGATTT CGGTAAAAGATACAGGGAGGTTCCCCATAGAGACGAGGCCTTTTCGGCTACAGTCGATGATCAGGGAAGCTTCCTGCCTTGCTAAGTGCTTGTGTGTACA TGAGGGCTTTGGTTTCGAAATCGATGTTCAGAGTTCTTTACCTGATGTAGTTATAGGGGATGAACGAAGGGCTTTCCAATTGATTTTGCATATGTTTGGT TATATGTTGGATCTATACGATGGAAGAGGGACCATCGTATTTCGGGTTTTCTTCGAGAGTCGCGGTGGCAGCGGAGGTGGACACAATGATAGAATGTTAG GCATGTGGAAAGCAAATGCTCCTGATGAACTTGTATCTGTGAAGTTTGAGATTGAGATTAGAGAGGAAAGTTCATCAATGTCGGATGGGCCAATGTCTGC TGCACAAAGAAGGGTAGCTGGTCCTGAAATCAAGGAAGCTCTTAGGTTCAGCATGTGTAAGAAGCTAGTTCAGATGATGCAAGGGAACATTTGGGTATCT CCGAACGCCTTTGGTCTTGTACGAAGCATGAATCTTGTCCTCAGGTTTCAAACCAGGCCATCATCAGTCGGAATAGCTACATTAACCTCCTCAGAACAAC TAAACAGTACTGCTCAATTCAACGGCCTGAAGATTGTGCTTGCCGATGATGACAACGTAAACAGAACCGTGACCAAAAAGTTGCTCGAAAAGTTGGGATT TGATGTCGCTGCTGTTGCTTCCGGATTCGAATGCCTCAGCACTCTAAGCTCCGAGAACTCCATTAGAGTAGTCATTCTGGACCTTCAGATGCCGGAAATG GATGGGTTTGAAGTTGCGACGAGGCTCAGGAAATTCCGGAGCAGGAACTGGCCCTTGATTATTGCCCTGACAGCCAGTGCAGAGGATAATGTATGGGAGA GGTGTCTGCAGGTGGGAATGAATGGAGTGATGCGAAAACCCGTTCTCTTACAGGCTATGTCTGAAGAACTTCGTAGAGTTCTTCAGGTAGCCGGATAA
AA sequence Show only first row Show all	>Lus10042549 pacid=23181858 polypeptide=Lus10042549 locus=Lus10042549.g ID=Lus10042549.BGIv1.0 annot-version=v1.0 MSRALSIEFLLLITSFISAYSVSAAADNEFANCNCDDEGGGFWTVQNILECQRVSDILIFVAYFSIPIELVYFVSYSNVPFKWVFLQFTAFICLCGLTHL LNAWTYYGPHSFQLMLSLTVAKFLTALVSCATAITLLTLFPMLLKMKVRELYLIQNVMELDQEVGMMKKKKIASIHVRMLTREIRKSLDKHNILYTTLVE LSKTLGLYNCAVWMPNEKRTEMNLTHELRASSPGSHQFSIPMNDPDLLDIKATKGVKILRSDSALRDVSSGGSNNEGSGPVAAIRMPMLRVSNFKGGTPE FVDTCYAILVLVLPNGSSWFDEAMEIVEVVADQVAVALSHAAVLEESQLMREQLSEQNRALQQAKMNATMASQARNSFQKVMSHGMRRPMHSIIGLLSLV QDDKMSFDQKIVVDTLMKASNVLSTLINDAMEISVKDTGRFPIETRPFRLQSMIREASCLAKCLCVHEGFGFEIDVQSSLPDVVIGDERRAFQLILHMFG YMLDLYDGRGTIVFRVFFESRGGSGGGHNDRMLGMWKANAPDELVSVKFEIEIREESSSMSDGPMSAAQRRVAGPEIKEALRFSMCKKLVQMMQGNIWVS PNAFGLVRSMNLVLRFQTRPSSVGIATLTSSEQLNSTAQFNGLKIVLADDDNVNRTVTKKLLEKLGFDVAAVASGFECLSTLSSENSIRVVILDLQMPEM DGFEVATRLRKFRSRNWPLIIALTASAEDNVWERCLQVGMNGVMRKPVLLQAMSEELRRVLQVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	0	1
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	1.0	0.8541
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	1.4	0.8361
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	4.9	0.8332
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	5.2	0.7796
AT3G18360			VQ motif-containing protein (....		Lus10009033 [exp]	5.4	0.7305
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10022411 [exp]	8.0	0.7863
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	10.6	0.8244
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	12.5	0.8108
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	19.0	0.7282
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	19.3	0.7920

Compare expression of checked genes

Lus10042549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.