Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53840 60 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02910 60 / 1e-09 F-box/RNI-like superfamily protein (.1.2) AT4G00160 59 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G50980 59 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 59 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G56440 59 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52680 59 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G44950 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G18780 58 / 3e-09 F-box/RNI-like superfamily protein (.1.2) AT1G66310 58 / 4e-09 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006970 [exp] 150 / 1e-41 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1) Lus10032255 [exp] 106 / 2e-25 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10024702 [exp] 105 / 2e-25 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 102 / 6e-24 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10024696 [exp] 94 / 5e-21 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10038967 [exp] 94 / 1e-20 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10024695 [exp] 91 / 2e-20 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10006513 [exp] 89 / 3e-19 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10024701 [exp] 83 / 4e-19 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 67 / 3e-12 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 66 / 1e-11 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 59 / 2e-09 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G395000 [exp] 57 / 1e-08 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G024600 [exp] 57 / 1e-08 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024200 [exp] 56 / 2e-08 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002001 [exp] 53 / 1e-07 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G322900 [exp] 52 / 4e-07 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.013G146800 [exp] 51 / 7e-07 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 51 / 7e-07 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042550 pacid=23182039 polypeptide=Lus10042550 locus=Lus10042550.g ID=Lus10042550.BGIv1.0 annot-version=v1.0 ATGCCGCAAACGGTTACTTCTCCAAATTATGACAGCTATGAGGCACCTACACTTCGCCTATGTGCTCGGATCAGATCAACCGTCCGTCGTAGATGCTCTA TCACTAACAGCCGATTCCACCTAGCTGGAAGCTTAAAGGTGTATCAGAGAAAGGGGAAGCGGGCCAGAAATGCTGTTGTTCAAGATGACTCCAGGCTGAG CGATTTTCCGGACCATATTTTGCTTCACATTCTCTCATTCCTCAAAACCAAAACTGTTGTTCGGACCAACATTTTGTCCAGGAGATGGAGATACCTATGG AAAGAGGTTCCTGTCCTTAATGTTTGGACCAACTGCTTTCGTTCAAACTCGGATTTGGTAGAGCACTTTGAGAAGTTCCTGTCTCTCCGTTCTTGCAATG CGGCTATATGCAGGATTAACTTCTACCACTTTTCACTTTTGTTATCCTTGGAAAAACCACCACTTGACTTGTTCCATAAAGTCATGGGATATGCTGGTGT TCATCTTAGCCACTTGGAATTCAGTGCGGGTGATTACTGTGGTTTTAACTCCTTTGACACCATGGCTGCTTCCATCATAGCTTCTCGTCACCATGAATCT CTAACGACTCTTGATTTTGAGGGTGTGAGCTTCTTCTTGCCAATGACATGTCGGTTCAAGTTGATCACAGATATGCGGCTGAGTTACTGCGTTTTGCACC CGGATGTGTTTGATGACTTCCCTTGTTTTAACTACTTGAGGCTTTTCGGTTGCGAGTCCAGCAGCTTGAAAATATCGGGGCTCAAGTTGGTGCGGCTGGA GATGCAAGAGGTATCCTGCGAAAGGACGATTGAAGTTTATGCTCCAAAGCTCAAATCTTTCTTTTTCCAAAGTCATATTCCAAGTGATGCGCAGTACGAT CATCCCCTTGCCGGTTTGAAGTCGTTGATGAAGCCTGGAGCCTCTCCCTTCACCAGATTGAAGACTCTTGAAGGTGGAGTATTTAGACGGGACACCGGAT GTAATACCTTACCAAGTGATTGGTTTCTTCTTCGATGGCTCTCCTCATTCAGAAGACAAGTCTTTCGAGCTCGAGAAGGTACATTTAGCAAGAACTGA
AA sequence Show only first row Show all	>Lus10042550 pacid=23182039 polypeptide=Lus10042550 locus=Lus10042550.g ID=Lus10042550.BGIv1.0 annot-version=v1.0 MPQTVTSPNYDSYEAPTLRLCARIRSTVRRRCSITNSRFHLAGSLKVYQRKGKRARNAVVQDDSRLSDFPDHILLHILSFLKTKTVVRTNILSRRWRYLW KEVPVLNVWTNCFRSNSDLVEHFEKFLSLRSCNAAICRINFYHFSLLLSLEKPPLDLFHKVMGYAGVHLSHLEFSAGDYCGFNSFDTMAASIIASRHHES LTTLDFEGVSFFLPMTCRFKLITDMRLSYCVLHPDVFDDFPCFNYLRLFGCESSSLKISGLKLVRLEMQEVSCERTIEVYAPKLKSFFFQSHIPSDAQYD HPLAGLKSLMKPGASPFTRLKTLEGGVFRRDTGCNTLPSDWFLLRWLSSFRRQVFRAREGTFSKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	0	1
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10010281 [exp]	1.4	0.9454
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	4.2	0.9468
AT5G14990			unknown protein		Lus10036529 [exp]	6.1	0.8819
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	9.0	0.9389
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	10.6	0.9282
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	12.1	0.9210
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	14.1	0.9192
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10015868 [exp]	14.3	0.8256
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	16.2	0.8859
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	16.4	0.9212

Compare expression of checked genes

Lus10042550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.