Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14465 167 / 1e-50 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G04570 164 / 1e-48 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT2G35270 157 / 2e-46 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G17800 150 / 5e-44 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT1G76500 149 / 2e-43 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT4G22810 146 / 6e-42 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G55560 145 / 1e-41 AT-hook AHL15, AGF2 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) AT2G45430 144 / 2e-41 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT2G42940 143 / 2e-41 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G12050 142 / 5e-40 AT-hook Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022010 [exp] 390 / 2e-138 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1) Lus10006577 [exp] 205 / 5e-65 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10020763 [exp] 158 / 4e-47 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10000519 [exp] 153 / 9e-45 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 151 / 9e-44 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10031460 [exp] 145 / 5e-43 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 138 / 2e-40 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10009301 [exp] 131 / 4e-36 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10015862 [exp] 129 / 1e-35 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044500 [exp] 220 / 4e-71 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.008G058700 [exp] 180 / 7e-55 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.010G074201 [exp] 175 / 2e-53 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.010G200100 [exp] 172 / 7e-52 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.014G070800 [exp] 164 / 3e-49 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G142800 [exp] 151 / 5e-44 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.008G164466 [exp] 147 / 6e-44 AT4G14465 184 / 3e-58 AT-hook motif nuclear-localized protein 20 (.1) Potri.003G116900 [exp] 150 / 1e-43 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.004G208600 [exp] 150 / 1e-43 AT2G45430 166 / 4e-49 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G115200 [exp] 150 / 1e-43 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10042551 pacid=23181650 polypeptide=Lus10042551 locus=Lus10042551.g ID=Lus10042551.BGIv1.0 annot-version=v1.0 ATGTCGAACACCTGGTGGGCAGGCCAAGTAGGCCATCCAAACAACAACAGTGCCGCCACCCCCAGCCAGCCAGATCTCGCCATCTCCATCTATAACAGCA CCGTCCCCGTCGAGAGCAGCTCCGGTGACCGCAACGGCGACGAAAGGGAGGAGCACAGCGCTGAAGACCCTAAGAAGCTAGCACTAGCTCCCCGCCGTCC AAGAGGAAGACCGCCGGGATCCAAGAACAGGCCGAAGCCGCCGATATTTGTCTCGAGGGACAGCCCCAACGCGCTTCAGAGCCACATGATGGAGATCGCC AGCGGCTCGGACATCGTGGAGAGCTTGGCTTGCTACGCAAGAAAGCGCCAATGCGGGCTCTGCGTGCTGTCCGGGAAAGGTATGGTTTCCGACTTGATGA TCAAGCAACCTTCGGCTTATGGGACGCCTGCAATATTGTCACTGCGCGGTAGGTTCGAGATCCTCTCCCTCACCGGATCTTTCCTCCCCGAACCAGCACC TCCCGGAGCGAATGGACTTTCCATCTACTGGGCCGGCGAAGAGAGGCAACTCTTGGGAGGGATCGTGGTGGGTTCGCTTGTAGCGAGCGGACCTGTGATG GTAATGGCATCTACATTCTCCAATGCTACTTATGAGAGGCTGCCGTTGGAAGAGGAGGAGAAGGATGGCGGGGCTACATCAATGTCGGGCTACGATTTGA TGCCGAACGGAGGACAATTGAGTCAAGCAGCAGGGTATGGGTGCAGGCCACCGCCGTTTTTTAGTGGGGCCCAGCCCCCCGCCGTTTTGAAGGGAGTTTC CGGAGAGGATTGGTGGCGATGA
AA sequence Show only first row Show all	>Lus10042551 pacid=23181650 polypeptide=Lus10042551 locus=Lus10042551.g ID=Lus10042551.BGIv1.0 annot-version=v1.0 MSNTWWAGQVGHPNNNSAATPSQPDLAISIYNSTVPVESSSGDRNGDEREEHSAEDPKKLALAPRRPRGRPPGSKNRPKPPIFVSRDSPNALQSHMMEIA SGSDIVESLACYARKRQCGLCVLSGKGMVSDLMIKQPSAYGTPAILSLRGRFEILSLTGSFLPEPAPPGANGLSIYWAGEERQLLGGIVVGSLVASGPVM VMASTFSNATYERLPLEEEEKDGGATSMSGYDLMPNGGQLSQAAGYGCRPPPFFSGAQPPAVLKGVSGEDWWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10042551 [exp]	0	1
AT1G65000			unknown protein		Lus10026159 [exp]	3.2	0.6301
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10013510 [exp]	16.2	0.5447
AT5G62440			Protein of unknown function (D...		Lus10024824 [exp]	20.5	0.5016
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	23.0	0.5426
AT2G30460			Nucleotide/sugar transporter f...		Lus10008596 [exp]	23.7	0.5073
AT1G74530			unknown protein		Lus10023603 [exp]	24.0	0.5920
AT5G42850			Thioredoxin superfamily protei...		Lus10023026 [exp]	26.7	0.5734
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000689 [exp]	41.0	0.5367
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024620 [exp]	56.8	0.5268
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	92.0	0.5162

Compare expression of checked genes

Lus10042551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.