Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04560 431 / 9e-150 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022011 [exp] 706 / 0 AT3G04560 465 / 3e-163 unknown protein Lus10035363 [exp] 327 / 2e-112 AT3G04560 215 / 7e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044600 [exp] 432 / 2e-150 AT3G04560 434 / 4e-151 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042552 pacid=23181759 polypeptide=Lus10042552 locus=Lus10042552.g ID=Lus10042552.BGIv1.0 annot-version=v1.0 ATGGGAGACAACCTTTTCGAAGGGCTCCCCCCTCCTTCTCATAAGCTGACGGAGGATAATCCTCAACCGCCGTCGACGAGCAACTTGGAAGTTGCGCTAG TTCCACCGCCTCCCAAACCAGCTTTGAAGAGCGCACTCAAACGGCCCAAGCCTGTGGAGTCAATCCAAGAGCCGGAAGGATCTGGTGCTGAAAAAGCTGA AGCACCACCTGAAAAGAAGAGGCTGAGGTTCAAAACCACAACTGATGCCTCTGAGCAACAAATTCTAGAAGCAATGCAGAAAATAGCTTCGCATATCAAG AATCCAACCAAGTTTTCAAAGGCGTCGAAGCTTGCTATACAGCTAATTAACTCTGGAGGTGTGAAGCCTGGTACATGCGACCAGTTCTTTGCCATTCTAG AGAGTGCAATGCTCACAAAAACGTTGTGTACGGATCCTGCTATTCGTGAAGATTATCGTGCATTGTTCTCGGCAGCACAGGACACTGCTGAATTTCTGAA TAAGAAGCAGAGGCATCAGTTGGAAACTTGGTCGATTATGGCAGTGGTGGCTAATGACTTGTTTACTGATGACAGCTTTGTGTTTTCGAAGGCTGCTACA CGAATAAAGGAGACCATAAGCAATTTACCAGTTGCAACCATGGATGATGATGCAGAGGAAGCTACAACCCTGGAAGAAGATGAAACTAGGACAGCTGATG GAGATGGAAATTTTGAGCGAGACGAAGCATCTGGTGCTGCACCAGTAGAAGAAACTGACAACATTGAGTCTGATCCATTTGGACTTGACGCATTTATTCC CAGCGCGGTGAAGAAAGATGCGAAGATAAGGGCCAAAGGATCCAAGACCAAAACGAGAAAGAACGAGGAGGATAGCGAGTATGACAGATTTCTCAAATGT CAAAGAGAAGCCTTAATCACTTGCTTAGAGATTGCTGCTCGGCGATACAAGACACCTTGGTGTCAGACAGTGATAGATATTCTAGTGGAGCACGCCCATG ATAACGTCGAGAGGTTCACGTCTCGACAACGAGATGCCATCGAGAAGCTGTGGGCTTCAATTCGGAAACAACACATTCGTAGGAAGCAAGGCAAGTCTGT GAATGGGAAGCTTGATGTGACTGCTTTCGAGTCGCTGCAAGAGAAGTACTCGACGGAGAAAATCAGTATTCGGAATGCGGTAGGTGGTGGTGGAGAACGC AAAGCCCAGCAATGGCTTGGATGA
AA sequence Show only first row Show all	>Lus10042552 pacid=23181759 polypeptide=Lus10042552 locus=Lus10042552.g ID=Lus10042552.BGIv1.0 annot-version=v1.0 MGDNLFEGLPPPSHKLTEDNPQPPSTSNLEVALVPPPPKPALKSALKRPKPVESIQEPEGSGAEKAEAPPEKKRLRFKTTTDASEQQILEAMQKIASHIK NPTKFSKASKLAIQLINSGGVKPGTCDQFFAILESAMLTKTLCTDPAIREDYRALFSAAQDTAEFLNKKQRHQLETWSIMAVVANDLFTDDSFVFSKAAT RIKETISNLPVATMDDDAEEATTLEEDETRTADGDGNFERDEASGAAPVEETDNIESDPFGLDAFIPSAVKKDAKIRAKGSKTKTRKNEEDSEYDRFLKC QREALITCLEIAARRYKTPWCQTVIDILVEHAHDNVERFTSRQRDAIEKLWASIRKQHIRRKQGKSVNGKLDVTAFESLQEKYSTEKISIRNAVGGGGER KAQQWLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04560			unknown protein		Lus10042552 [exp]	0	1
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	9.7	0.8330
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	19.4	0.7947
AT2G44020			Mitochondrial transcription te...		Lus10004614 [exp]	24.0	0.7812
AT1G65700			Small nuclear ribonucleoprotei...		Lus10042884 [exp]	27.7	0.7870
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	36.4	0.7673
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10024048 [exp]	40.4	0.7463
AT1G02870			unknown protein		Lus10001459 [exp]	46.5	0.7583
AT5G06790			unknown protein		Lus10023815 [exp]	54.5	0.7251
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10014178 [exp]	60.2	0.7438
AT1G78880			Ubiquitin-specific protease fa...		Lus10030215 [exp]	61.3	0.6883

Compare expression of checked genes

Lus10042552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.