Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56070 269 / 2e-93 ROC2 rotamase cyclophilin 2 (.1.2) AT2G16600 262 / 1e-90 ROC3 rotamase CYP 3 (.1.2) AT2G21130 248 / 3e-85 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 243 / 5e-83 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT4G38740 238 / 3e-81 ROC1 rotamase CYP 1 (.1) AT2G29960 219 / 3e-73 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 218 / 6e-73 ROC7 rotamase CYP 7 (.1) AT3G55920 207 / 2e-68 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G63400 205 / 2e-65 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G15790 190 / 8e-60 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022012 [exp] 326 / 7e-116 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10012167 [exp] 254 / 2e-87 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10017258 [exp] 253 / 3e-87 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10007579 [exp] 253 / 6e-87 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10013552 [exp] 245 / 6e-84 AT2G16600 297 / 1e-104 rotamase CYP 3 (.1.2) Lus10018238 [exp] 220 / 2e-73 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 220 / 2e-73 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 214 / 5e-70 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 202 / 2e-66 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014396 [exp] 284 / 2e-99 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G240200 [exp] 252 / 6e-87 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 252 / 8e-87 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 251 / 3e-86 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 246 / 2e-84 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.001G251700 [exp] 219 / 2e-73 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.009G046500 [exp] 218 / 5e-73 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.010G189000 [exp] 217 / 5e-72 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G215800 [exp] 201 / 2e-61 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.007G040100 [exp] 193 / 4e-61 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10042553 pacid=23182031 polypeptide=Lus10042553 locus=Lus10042553.g ID=Lus10042553.BGIv1.0 annot-version=v1.0 ATGGCGAAGAATCCAAAGGTGTTCTTTGACATTGTGATAGGCAAGGTGAAAACTGGCAGGGTGGTGATGGAGCTGTTTGCAGATACAGTCCCAAAAACAG CTGAGAATTTCCGAGCTCTATGCACGGGAGAGAAAGGGATTGGGAAAGCAGGGAAGCCTTTACATTACAAGGGCTCGGCTTTCCACCGTATAATCCCGAA TTTCATGTGTCAAGGTGGAGACTTTACCAGAGGAAATGGAACTGGTGGCGAATCAATCTATGGGGAGAAGTTTGCAGATGAGAACTTCAAGCTGAAGCAC ACGGGTCCTGGGATCCTGTCCATGGCTAATGCGGGAAGGAACACTAACGGATCTCAGTTCTTTATTTGCACAGATAAGACAGCTTGGCTAGATGGGAAGC ACGTTGTGTTTGGGAAAGTTGTTGATGGGTATGGATTTGTGAAGGAGATGGAGAAGGTTGGTTCAGATAGCGGAATTACTTCTCAGTCTGTTGTTATTGA GGACTGTGGCCAGATTGATGATGAGCAACAGTGA
AA sequence Show only first row Show all	>Lus10042553 pacid=23182031 polypeptide=Lus10042553 locus=Lus10042553.g ID=Lus10042553.BGIv1.0 annot-version=v1.0 MAKNPKVFFDIVIGKVKTGRVVMELFADTVPKTAENFRALCTGEKGIGKAGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGEKFADENFKLKH TGPGILSMANAGRNTNGSQFFICTDKTAWLDGKHVVFGKVVDGYGFVKEMEKVGSDSGITSQSVVIEDCGQIDDEQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	2.0	0.8958
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	7.9	0.8859
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10040718 [exp]	9.5	0.8215
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	10.8	0.8225
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	13.3	0.8921
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10016453 [exp]	14.8	0.8521
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	14.9	0.8386
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	19.9	0.8192
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10021027 [exp]	19.9	0.8444
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	20.0	0.8558

Compare expression of checked genes

Lus10042553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.